Moritella viscosa: MVIS_0219
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Entry
MVIS_0219 CDS
T03770
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mvs
Moritella viscosa
Pathway
mvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MVIS_0219 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvs03021
]
MVIS_0219 (rpoB)
03400 DNA repair and recombination proteins [BR:
mvs03400
]
MVIS_0219 (rpoB)
Enzymes [BR:
mvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MVIS_0219 (rpoB)
Transcription machinery [BR:
mvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MVIS_0219 (rpoB)
DNA repair and recombination proteins [BR:
mvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MVIS_0219 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CED58254
UniProt:
A0A090IEV0
LinkDB
All DBs
Position
1:250655..254692
Genome browser
AA seq
1345 aa
AA seq
DB search
MVYSNTEKKRIRKDFGKSAPVVAKPQMLAIQTSSFKKFLEMDHTGEYGLEAAFRSVFPIK
SYSGTSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVLYDRDAPAGTIKDIKEQ
EVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDSLFVRIDRRRKLPSSIILRALEFTTEEILAIFFDTTRFEVKDGKLLME
LMPDRLRGETAAFDIIANGEVYVENGRRVTARHIKKFEKDGVTEIEVPLEYIAGKVASKD
YVNEETGEVIVAANAELTLESVAELSQAGIKVIDVLYTNDLDVGSYMSDTLRVDSTTNKL
EALVEIYRMMRPGEPPTREAAEGLFQNLFFAEERYDLSTVGRMKFNRRIGREEDTGSGIL
NKADIVEVMKTLINIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAVMPQDLINAKPISAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVFARTNDYGFLETPFRKVINGKVT
NDVQYLSAIEEGLYAVAQANATIDTNGVLQDEFIPCRHKGETTFMSSDQIQYMDVSPQQI
ISVAASLIPFLEHDDANRALMGANMQRQAVPTLNADKPLVGTGIERAVAIDSGVTVVAKR
GGSIDYADASRIIVKVNEDELVPGEAGIDIYTLTKYTRSNQNTCINQRPTVLTGEAVVKG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRLTTIHIQELSSIA
RDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKPGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVYGTVIDVQVFTRDGVDKDKRAQDIEQMQLREAKKDL
TEELSIFEESLFGRVKSLLLTAGKTEEQLNAVSRAQWLEIVLADEEQQTQLEGLAKQHDE
LRADFDSKFDIKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PIEDMPHDKFGEPVDIVLNPLGVPSRMNIGQVLEVHLGLAARGIGSKIDNMIKEQQDLAK
IREFMQKAYDIGDSHQKVDLSTYSDEQVRVLAHNLRKGLPMATPAFDGAAEAEIKEMLKL
ADLPESGQLELFDGRTGDLFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMDPGMPE
SFNVLLKEIRSLGINIELDENKGKK
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtttactctaataccgaaaaaaaacgtatccgtaaagactttggtaaaagtgcacca
gttgtggctaaaccgcaaatgttggctatccaaactagctcttttaaaaagtttttagaa
atggatcacacaggtgaatacggcctggaagcagcattccgtagcgtgttccctattaaa
agttactctggaacttcagaacttcaatatgtatcgtaccgtctaggtgaaccagtattt
gacgttaaagaatgtcaaatccgtggtgttacttattctgcaccgctgcgtgttaaatta
cgtcttgtattatacgatcgtgatgcaccagctggtactattaaagatatcaaagaacaa
gaagtctacatgggtgaaatcccattaatgactgatactggtacttttgttatcaatggt
acagagcgtgttatcgtatctcagttacaccgtagtcctggtgtattcttcgatcacgac
aagggtaaaactcattcatcaggtaaagtattatataacgcacgcgttattccttaccgt
ggttcatggttagactttgaattcgatccgaaagatagtttattcgttcgtattgaccgt
cgtcgtaaattaccatcatcaattattcttcgtgcactagagttcacgacggaagaaatc
ttagcaatcttctttgatactacacgttttgaagttaaagatggcaagttattgatggaa
ctaatgccagatcgtctacgtggcgaaactgcggcatttgacattattgctaacggtgaa
gtatacgttgaaaatggtcgtcgtgttacagctcgtcatatcaagaaatttgaaaaagac
ggcgtaacagagatcgaagtaccattagagtatatcgctggtaaagttgcctctaaagat
tacgttaatgaagaaacaggcgaagtgattgttgcagcgaatgctgaactaacactagaa
tctgttgctgaattgtctcaagctggtatcaaggtaattgatgttctttatacgaacgac
cttgatgtaggtagttatatgtctgacacattacgtgttgactcaactactaacaaactt
gaagcgttagttgaaatctaccgcatgatgcgtcctggtgaaccaccaacgcgtgaagcg
gctgaaggtcttttccaaaatctattcttcgcagaagaacgttatgatctatctactgta
ggtcgtatgaagttcaaccgccgtattggccgcgaagaagatactggctcaggcattctg
aataaagcagatattgttgaagtgatgaaaactttgattaatatccgtaacggtaaaggc
gaagttgatgatatcgatcaccttggcaaccgtcgtattcgttcagttggcgaaatggca
gaaaaccaattccgtgttggtttagttcgtgtagaacgtgctgttcgtgaacgtctaagt
cttggtgatcttgatgcagtaatgccacaagatttaatcaatgctaagccgatttcagct
gcgattaaagagttctttggttcatcacaactgtctcagttcatggatcaaaataaccca
ttgtcagaagtgacgcacaaacgtcgtatttctgcattaggtcctggtggtctaacacgt
gaacgtgctggttttgaggtacgtgacgtacatccaactcactacggtcgtttatgtccg
attgagactccagagggaccaaacattggtctaattaactcactagctgtatttgcccgt
actaacgattatggtttcttagaaacgccattccgtaaagtaatcaacggtaaagtcact
aatgacgttcaatacctttcagctatcgaagaaggtctgtatgcagtagcacaggctaac
gcaactatcgatactaacggtgtattacaagatgaatttattccatgtcgtcacaaaggt
gaaacaacctttatgtcttcggatcaaattcagtatatggacgtatctccacagcaaatt
atttctgtggcggcatcgctaattccgttcctagaacacgatgatgctaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcagtaccaacactaaatgctgataagccattagtg
ggtactggtatcgaacgcgcggtagcaatcgattctggtgtaactgttgttgcaaaacgt
ggcggttcaatcgactatgctgatgcaagtcgtatcatcgttaaagttaacgaagatgaa
ctagtacctggtgaagcgggtattgatatctacacgctaactaagtacacacgttcgaac
caaaacacatgtattaaccaacgcccaacagtattaactggtgaagctgtggttaaaggt
gatgtgcttgctgacggtccttcaacagaccttggtgaattggctcttggccaaaacatg
cgtatcgcattcatgccttggaatggttacaacttcgaggattcaatccttgtatctgaa
cgtgttgtaaaagaagatcgtctaacgactatccacattcaagaattatcatcgattgcg
cgtgatactaaacttggtagcgaagagattactgcggacatccctaacgtgggtgaaagt
gcattatctaagctagatgagtctggtatcgtttacgttggtgctgaagttaagccgggt
gatatcctggtaggtaaagtaacccctaaaggtgaaacacaattaacgcctgaagaaaag
cttctacgagctatcttcggtgaaaaagcatcagatgtgaaagacagttcattacgtgta
cctaactctgtttacggtactgtaattgacgtgcaagtatttacccgtgatggcgtagat
aaagataaacgtgcacaagacatcgaacagatgcaattacgtgaagcgaaaaaagattta
actgaagaattatctatcttcgaagaaagcttattcggtcgcgttaaatctctattactt
actgcaggtaaaacggaagagcaacttaatgctgtttctcgcgcacaatggttagagatt
gttcttgctgatgaagaacaacagactcaattagaaggcttagctaagcaacatgatgag
ctaagagctgactttgattctaagtttgatatcaaacgccgtaaaattacccaaggtgat
gacttagcaccgggtgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataagatggccggtcgtcatggtaacaaaggtgtgatctcaacaatcgtt
cctattgaagacatgccacacgataagtttggtgagccagttgatatcgtactgaaccca
ctgggtgtaccatcgcgtatgaacatcggtcaggtacttgaagttcacttgggccttgct
gctcgtggtatcggtagtaaaatcgataacatgattaaagagcaacaagatcttgctaag
atccgtgaatttatgcaaaaagcatacgatatcggtgattcgcatcagaaagttgattta
tcaacttattctgatgagcaagttcgtgttcttgcgcataacttacgtaaaggtctgcca
atggcaacacctgcgtttgatggtgctgcagaagctgaaatcaaagaaatgcttaaactg
gctgatttaccagaatctggccaattagagttattcgatggccgtactggtgacctattc
gaacgtccagttaccgttggttacatgtacatgctgaaactgaatcacttggttgatgac
aagatgcatgcacgttctaccggttcttacagcctagttactcagcagccgctgggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggctctggaagcatac
ggtgcagcatatactctacaagagatgctaactgttaagtctgatgacgtgaatggtcgt
actaagatgtataaaaacatcgtagacggcgatcatcgtatggacccaggtatgcctgaa
tcattcaacgtattgttgaaagagatccgctcattgggtatcaacatcgaactagatgaa
aacaaaggtaagaaataa
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integrated database retrieval system
