Mizuhopecten yessoensis (Yesso scallop): 110449054
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Entry
110449054 CDS
T05079
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03020
RNA polymerase
myi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110449054
09124 Replication and repair
03420 Nucleotide excision repair
110449054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myi03021
]
110449054
03400 DNA repair and recombination proteins [BR:
myi03400
]
110449054
Enzymes [BR:
myi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110449054
Transcription machinery [BR:
myi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110449054
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110449054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
110449054
NCBI-ProteinID:
XP_021351303
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MAYTGDSNATMRDVKRVQFGILSPDECRRMSVTDGGIRYSETMEGGRPKLNGLMDPRQGT
IDRNARCQTCAGSMSECPGHFGHIELAKPVFHVGFFTKTIKVLRCVCFFCSKLLADPTNP
KMKDVLTKSKGQPRKRMAHVYELCKGKKICEGGDEMDTKLGEQQKREGDEEKTGHGGCGR
FQPRIKRTGLELVAEWKNVNEESQERKIMLTAERVHEIFKRISDEECLVMGMEPKYARPD
YMIVTVMPVPPLSVRPAVVMFGAARNQDDLTHKLSDIIKANNQLKRNEQNGAAAHIISED
TKMLQFHVATLIDNEMPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNMTFPEVVTPFNIDRMHELVRRGSNQYPGAKYILRDNGER
IDLRFHPKASDLHLQIGYKVERHMQDNDYVVFNRQPTLHKMSMMCHRVKVLPWSTFRLNL
SVTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDVFINRGEMMNLLMFLPTWDGHVPQPAILKPKPLWTGKQLFSLIIPGRVNCIRTH
STHPDEEDSGPYKWISPGDTKVLIEDGVLISGILCKKTLGTSSGSLPHVVFMEMGYEIAG
LMYGHIQTVINNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKVDVIDVIEKAHNDDLE
PTPGNTLRQTFENQVNRILNDARDKTGGKAQKSLSDFNNFKAMVVAGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLTYGEDGLDGCGVEFQAL
PTLKPSHKSFEKKFKFDASNERNMRKCLTEDIIKELIGDASAISELEKEWDQLKEDRDVL
RKIFPMGDSKVVLPCNLTRLIWNAQKIFRINKRKPTELHPVKIVTGVADLCKRLNTVPGP
DRLSVQANYNATILIKCLVRSTLCAKRVTEEFRLSSEAFEWLLGEIETRFQQAHVQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLTGQ
GARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPNPQNTVISEDQEWVNVYYEMPDFDVSR
ISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDE
SKMQSDEEIVDKMEDDVFLRCIESNLLSDMTLQGIEAIAKVYMHLPNTDDKKRIYLTEEG
EFKGVAEWILETDGTALMKVLSQRDVDPIRTTSNDIVEVFATLGIEAVRKSIEKEMNHVI
SFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHG
ECDPMKGVSECIMLGQLAKIGTGSFDLLLDAEKCKFGMEIPQNVGPGLGGGAGTGFFFGG
GSSPAAGMSPQMTPWQQGATPAYGTAWSPGFGSGMTPGAAGFSPSGASESGYSPGYSPAW
SPQPGSPGSPASPYIPSPAGALSPSYSPASPAYVPSSPAVTPQSPGYSPTSPSYSPTSPG
YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPKYSPTS
PSYSPTSPSYSPSSPQYSPSSPQYSPSSPNYSPTSPSYSPSSPKYSPTSPTYSPTSPKYT
PTSPEYSPSSPNYSPGFSSLSPTSPGYSPASPSYSPTSPKYSPASPTYSPSSPKYTPTSP
TYTPGTTTSTTPKYSPTSPAYSAADDSDED
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacacaggcgattcaaacgccactatgagagacgtgaagagagtccagtttggc
attctcagtcccgacgaatgtcgacgaatgtctgtcactgatggaggtatccgatattcc
gagacgatggaaggcgggcgtcccaagctaaatggattgatggacccaagacaaggaacc
attgacagaaatgccagatgtcagacttgtgctggcagcatgtctgaatgtccaggtcac
tttggtcacatagaattggcaaaaccagtttttcatgttggcttcttcacaaagacgatc
aaagtgctgagatgtgtgtgtttcttctgctccaaattgttggcagacccgactaatccc
aaaatgaaagatgttctgaccaagtctaagggacagccaagaaaaaggatggctcatgta
tacgagctatgtaagggcaaaaagatctgtgaaggaggagatgaaatggacacaaagtta
ggagagcaacaaaaacgagagggggatgaagaaaaaacgggccatggaggttgtgggcgc
tttcagcctcggatcaaaagaacaggtttggaactggtggctgaatggaaaaatgtaaat
gaggagagtcaagagagaaagatcatgctgacggcagagagagttcacgagatattcaag
agaatatcggatgaagaatgtttggtgatgggaatggagcccaagtatgctcgtcctgac
tatatgatcgtgacagtgatgccagtgccaccactctctgttaggccagctgtggtcatg
tttggtgcagccaggaatcaggatgatttgactcacaagttatcagacattatcaaagcc
aacaatcagttgaagaggaatgaacagaatggagcagcagcacacattatatcagaggac
acaaaaatgctacaattccacgtggccacactcatcgacaatgagatgcctggccttcca
aaggctgtacagaagtcgggccgacctctgaagtctgttaaacaaaggctgaagggaaag
gaaggacgcgtccgaggcaacttgatggggaaacgtgtggacttctctgccagaactgtc
attaccccagatccaaacctcaggattgaccaggtcggggtgcctagaagtatagcacag
aacatgacatttccagaggtagtcacacccttcaacatagacagaatgcacgagcttgtg
cggagagggtcaaatcagtacccaggagccaaatatattctaagagacaacggtgagagg
atagacctaagatttcaccccaaagccagtgacctccatctccagattggttacaaggtt
gagagacacatgcaggataacgactatgtggtgtttaacagacagccaaccctccacaaa
atgagtatgatgtgtcacagagttaaggtgctgccatggtcaaccttcagattgaatctc
agtgtaaccacaccctacaatgctgactttgatggggacgagatgaatctccatttacca
cagtccctggaaacaaaggccgagatctcaaaccttgctttggtcccaaggatgatcatc
actccccagtccaacaggcctgtcatgggtatcgtacaggacacactgactgctgtccga
aagatgaccaagagagacgttttcattaacaggggtgaaatgatgaacctgcttatgttt
ctgccaacatgggatggccatgttcctcaacctgctatactcaagcccaaaccactttgg
acaggcaagcagctattctccttaatcatccctggccgtgtgaactgtatcaggacccac
agtacacatcctgatgaggaggactctggcccatacaaatggatttcccctggagacaca
aaggtgttgattgaggatggcgtgctgatcagtgggatcctatgtaagaagaccctgggt
acatccagcggctccctacctcacgttgtatttatggagatggggtacgagatagcagga
cttatgtacggtcacattcagacagtaattaacaactggcttctactggagggacacagt
atcggtattggagacacaattgctgaccctcagacctatatagacatccaggacaccatc
aagaaagcgaaggtggacgtgatagacgtcattgagaaggctcacaatgatgatttggaa
ccaaccccaggaaacacgctgcgtcagacttttgaaaaccaggtgaatcgtatcttgaac
gatgctcgtgacaaaactggaggaaaagcccagaagtccttatcagatttcaacaacttc
aaagctatggtggtggcaggatccaaggggtccaagattaacatctcccaggtcattgcc
tgtgtggggcaacagaacgttgaaggtaaacgtatcccgtttggttttcgacatcgaaca
ctgcctcatttcatcaaagatgattatggtcctgagtcaagagggttcgtggagaattcc
tatcttgctggtctgacgccatctgagttctatttccacgccatgggaggtcgagaagga
cttattgatactgctgtgaaaactgctgagactgggtacattcagcgacgtctgatcaag
gctatggagagtgtgatggtcaagtacgatggtacaatcagaaaccaggttgaacagctg
gtccagttgacgtatggggaggacggacttgacggatgtggggtcgagttccaggcgctc
ccaacactcaaaccttcacacaaatccttcgagaaaaagttcaagtttgatgcttcaaat
gagagaaacatgcggaagtgtctgacggaggacatcattaaggagctaattggtgatgcc
tctgccatatctgagctggagaaggaatgggatcagttgaaagaagatcgtgatgtgctg
cgaaagatcttccccatgggtgacagcaaggtggtcctgccctgtaatctaacaagactc
atctggaatgcacagaaaatcttcaggatcaacaagcgtaaacctacagaactccatcca
gtcaaaattgtgacaggtgtcgctgacttgtgcaaacggttgaacactgttcctggacct
gacagactcagtgtgcaggccaattacaatgccaccattctgatcaagtgtctggtgcgg
tccaccctatgtgccaagcgagtgacagaagagttcagacttagctctgaggcatttgag
tggctgcttggtgaaatcgagacgcgctttcaacaggctcatgtacaaccaggagagatg
gtcggagcgttggctgcccagtcgctcggagaacctgccacacagatgacactcaacact
ttccattacgctggagtatctgccaagaatgtaactctaggtgtgcctcgtctcaaggag
atcatcaacatctctaagaaaccaaagactccttcccttactgtgtacttgactggccag
ggagcaagagatgcagaaaaggccaaggatgtactgtgtaggctggaacacacgactttg
agaaaggtcacagctaacacggccatttattacgacccgaacccacagaacacagtcata
tccgaggaccaggaatgggtcaatgtgtactatgaaatgccggactttgatgtgtccagg
atttcaccctggctgctccgaatagaactggacagaaagaggatgactgacaaaaagctt
accatggagcaaatttcagaaaaaatcactgcaggttttggagatgatcttaactgcatc
ttcaatgacgacaatgcagagaaattggtgctacgaattcgaatcatgaattcagatgaa
agcaaaatgcaaagtgatgaggaaatcgtggacaagatggaagatgatgttttcctccga
tgtatcgagtccaacctgctgtctgacatgaccttacaaggaattgaggccattgctaag
gtgtatatgcatctccccaacacggatgacaagaagagaatatacctcacagaggaggga
gagtttaaaggtgtcgcagaatggatcctggaaacagatggaacagcactgatgaaagtg
ctcagtcagcgggatgttgatccgatccgaacaaccagtaacgacattgtcgaagtcttt
gctacacttggcatcgaggcagtgagaaagtcaattgagaaagagatgaaccatgtcatt
tcttttgacggatcctatgtcaactaccgtcacttggccttgttgtgcgatgtgatgact
gccaaaggtcacttgatggctatcacccgtcacggcatcaacagacaggagacgggagca
ttggctcgctgctcctttgaagaaacagtggacattctcatggaggcggcggcccatgga
gaatgtgatcccatgaagggtgtgtctgaatgtatcatgttgggacagttggccaagatt
gggactggaagcttcgatcttctccttgatgcagagaagtgtaaatttggcatggagata
cctcagaatgttggcccaggcttaggaggaggagctggcactgggttcttctttggtgga
ggaagcagtccggcggccggtatgtctccacagatgaccccatggcaacaaggtgccact
ccagcatacggcactgcttggtcaccagggtttggtagtggtatgacacctggagctgcc
gggttttctccctctggtgctagtgagagtggttacagcccaggatacagtcctgcatgg
tcccctcaaccaggctcgcctggatcgccagccagcccatacataccaagtccagctggg
gccctgtcaccaagctactcgcctgcatcaccagcgtatgtgccatcttctccagctgtc
acaccacaaagtcctggatactccccaacaagtccttcctattcgcctacaagcccaggt
tactcgccaacctcgccgaactacagtccaacaagtccttcctactccccaacctccccc
tcctacagcccaacttccccgtcctactccccaaccagcccctcctactcgccaacaagt
ccctcctatagcccaactagtccttcgtactccccaacctccccttcctattcaccaacc
agtccttcctacagtccaacgtccccatcctacagtcctaccagcccctcttactcgcct
acaagtccctcctattcccccacatcaccatcttactctccaactagtccttcttactcc
ccaactagccctagctacagccccacatctcctagttattccccaacttcgccaagttat
tcccccacctctcctagttactccccaacctcgccctcctactccccaaccagcccatcc
tattccccaaccagcccctcatatagccccagttctcctagctactctccctcaagccca
agctacagtccgagtagtccaagctattccccaagcagccccaaatacagccccacaagt
ccctcttattctccaaccagtccatcatactccccaagttccccccagtactcgccaagc
tctccacagtactcgccctcgtctccaaattactcccccacaagtccatcgtattcgcct
agtagccccaagtacagcccaacatcacccacttattccccaacctcccccaagtacacc
cctacatcaccagagtatagcccaagttcgcccaactacagccctgggttctcatctctg
tccccaacgagccctggctactctcccgctagtccctcgtattccccaacaagccccaaa
tactccccagctagtcctacatactccccaagcagccccaagtacacgcctactagccct
acctacacaccagggacaaccacttcaacaacgcccaagtactccccgactagcccagca
tactcggcagctgatgatagcgacgaggactag
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integrated database retrieval system
