Mizuhopecten yessoensis (Yesso scallop): 110450788
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Entry
110450788 CDS
T05079
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110450788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110450788
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110450788
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110450788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
TFIIA
DUF6857
VPS13_N
ECM10
DUF4820
EOS1
EIF4E-T
DDHD
Lin-8
Motif
Other DBs
NCBI-GeneID:
110450788
NCBI-ProteinID:
XP_021354169
LinkDB
All DBs
Position
Unknown
AA seq
2454 aa
AA seq
DB search
MNLDSLSFALAEISYSVSNLTKKNFKSSVGEISHLVLQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGTLLSKPNFVSTLCYAIDNPLHHQKCLRPSPHLFPQISRVLK
LTRVQEVVFGLALLNSSSSETRPLAVQFVKQKLPDLVRSYVDTVDTGLRQEGGLQDVDVE
ILHLLLNQIQSNKDNFGLGAEQREAFYRTLRKDFPHNRVPVILGPLLYPEAEDLAISKLS
DTTNMPKSVLDASLADMVLEAGYSCTISVEECRGKLLQFGIREITPASVAKVLGMMARTP
SGLSESGHNQAQMNAAPGSGWPDMGEKVDKLGVNTWNVEVFVSVVQDLVRQINLSAVKYD
KAPHFNWRDVVLQLDHSGFMVVNKKGLRLLVQGLIRGLQEVFPVEFVYRPWKNTEGQLSF
IKQALRNPDVFCFGDYPCHTVVIDILKAAPDDENRDIGTWKSLDLVETLLRLSEAGYYQQ
VSELFKFPIQNCPDMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQ
GHSSTIRTLIMHSMAEWYMRGEQHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACL
ASRREYLKLDKWLSDKIREHGEPFIQTSVNFLKRRCPQLMGGPAKDEQLPQAKSQMLPTD
TIATMLSCLQHCASQVSQELSEAILTMVANASMILNKARQAPPVPKSNLPPTLLNQPTSQ
SNLLDSLDNANTLGIPKSWGMSGVNSGFPQNLTSLSTTATPGSPAKGAGFQPISQPSGFG
AMQNITNQLQSLSMSNPMGVPPRNPSVNTLGTISSQAVIKQQQQQQVQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQLRAGGMSQVSGEMSTIFPDMSQQFTREVEDEANSYFQRIY
NQHPHPTMSIDEVLDMLKRFKDSPNRREKDVYECMLRNLFEEYRFFPQYPERELHITAVL
FGGIIEKGLATYMALGIALRYVLEALKKQLNSKMYYFGIAALDRFKTRLKDYPQYCQHLA
AIPHFQQFPQHLIEFVEYGARSQEPPVIPSISRTMTPTAVGGVSFTGTAPTVTPTPTSAA
ISSAEGPMPPVLAPAPAAAPTPAAVTTTTTATTTAVTTGTTKPSSLPKPSIASATNIDTL
LAGQGNEESSIPPESVQDKVFFIFNNLSLANMVQKAEELRKEITEDYYCWSAQYLVMKRA
SIEPNFHTLYANFLDALQIPDIAHMVIRETFRNIKVLLRSDKGDANFSDRTLLKNLGHWL
GMLTLAKNKPILQIDIDLKALLYEAYHKGARELLYVVPFTAKVLESCAKSKVFRPPNPWT
IGIMNVLAELHQEPDLKLNLKFEIEVLCKTLTLDLNELNPSTYLKDTSRISTTEPQLSNM
VKSMPPPPMPIPQPEQPLVQLTAPVPTPPVSTTSVASTVTTTTPNMPPRPQFAFDEVVTA
NLNSIGSHIVTSDQIPLFQGNPNLKQLVKIALEKSIQELLPPVVERTIKITLQTCEQIIK
KDFALDPEENRMRAAAHHMVRNMTAGLALITSREPLYLSINNNLKSAFMTTLRVNEGATQ
AQKEMIEQAAQLVAQENTELACVFIQKTAVEKAIPEIDKRLATEFDLRKHARSEGRRYCD
PVILTYQAERMPEQIRLKVGGVTAGQIAVYEEFAHNIPGFQPTNDPSLPPGVPKPVPTYS
IDDLTQILDRIRRDMEQYMQHLMGIPTSNPLVVQLHSLLEAVLLARNNREVVTSIALLQK
AVEGLLDHYTFSQLSTDQDLLVRFRDCNLMVLKSLQDQRAYGPQWTNKQVTRCLIEVGGD
NKYNADAVDCLIRSGLVSMQQYDLYLVQLMENGLNYVGVMFTMQLVQRYCVDDKANSPVT
EVDFANTIEALTQVNTRNQRPPEGLSQMLEGLHPPVDFGLLERAIGGPTSMMQSGISQAR
ELDDPPGLHEKTEFLLREWVNMYHSPAAGRDSTKAFTAFVQQMHQQGILKTDDLITRFFR
LCTEMCVDLCYRALGEQSQNPALVRAKCFHTLDAFVRLIALLIKHSGDTANTVTKINLLN
KVLGIVAGVLLQDHAVRQSEFQQLPYHRIFIMLFIELNAPEHILENINFQVLTAFCNTFH
VLRPAKAPGFAYAWLELLSHRVFIGRLLALTPQQKGWGMYAQLLLDLFKFLTPFLRNAEL
TKPTQLLYKGTLRVLLVLLHDFPEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVDMLADIAHPPRILTNFAKMIEPASFKKDLDSYLKTRSPVTFLSELRSNLQLN
EPGMRYNIPLMNALVLYVGTQSIQNIHSKGLTPSMSTIIHSAHMDIFQNLGVDLDTEGRY
LFLTSISNQLRYPNSHTYYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLI
TFIELIKNPQFKFWNHEFVHCAPEIEKLFESVARSCMQPKTGQSLREAETNEIH
NT seq
7365 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcatttgccttggcagaaataagctattctgtgtccaattta
acaaagaagaatttcaaatcgagcgttggagaaataagtcatcttgttctgcaacacgga
gctgaagcagataggcacttattccggtgccttttctcacatgtagacttcagcggtgat
ggtagaagtagcggaaaagactttcaccagacacagtttctgatacaggagtttgggact
ctgctgagcaaaccaaattttgtgtcaactttgtgttacgccatcgacaatccattacat
catcagaagtgtttacgtccatcaccacacctcttcccacaaattagtcgggtcctgaag
ctgacccgcgtacaggaagttgtgtttggattagcattactaaactcttcaagctccgag
actcgaccccttgccgtacagttcgtcaaacagaaactaccagatcttgtcagatcttat
gttgatacagtagacacaggattgcgtcaggaaggcggtctgcaggacgtggacgttgag
atactccaccttctgctcaaccagatccagagtaacaaggacaactttggacttggtgca
gaacaaagggaagctttctacagaacactcaggaaagactttcctcacaaccgtgtccct
gtcatattaggaccgttgctttaccctgaggcagaggatctagctatttcaaagctctcg
gacactacaaacatgccgaaatctgtgctggatgcgtcgctggcggacatggttctggag
gctggatacagctgcaccattagtgtggaagaatgtcgtgggaagctcctccagtttggc
ataagggagataactccagcatctgtggccaaagtgttggggatgatggcaagaacacca
tcagggctgtcagaatcggggcacaaccaggcccagatgaatgctgcaccaggcagtggc
tggcctgacatgggggagaaggtagacaagcttggtgtgaacacttggaatgttgaggtg
ttcgtcagcgtcgttcaggatctggtaaggcagattaatctgtctgctgtaaaatatgac
aaggcgccccacttcaactggagagatgtagtgctacagcttgatcactcagggttcatg
gttgtcaacaagaaaggactgcggctgctggtgcagggactgatccgaggactacaggaa
gtgtttcctgtcgagtttgtatatcgaccatggaaaaacacagagggacagttgtcgttc
atcaagcaagcgctgcgtaacccagatgtgttctgttttggagattacccttgtcacaca
gtggtcatagatatcctgaaagctgctccagacgacgagaaccgggacattggaacatgg
aaatcactggaccttgttgagaccttgctgcgactatctgaggcagggtactaccagcag
gtgtctgaactcttcaagttccccatccagaattgtcctgacatgcttgtactggctctg
ctgcaaatcacaccaacatggaacaccctcaaacaggaactgatatccacactgatgcca
atcttcttaggaaatcatccaaactcggctgttgtccttcattatgcttggcattgtcag
ggccactccagcaccatccggaccctgataatgcactcaatggcagagtggtacatgcgt
ggagaacagcacgaccagacacgactgtccagaatactggatgttgcacaagatcttaag
gccctctccatgctgttgaatgccacaccatttgcttttgtaattgacctggcttgtctg
gcttcaagacgtgaatatctcaagttggacaaatggctgtcagacaaaatccgagagcat
ggggagccgttcatacagacatcggtgaacttcttgaagcgacgctgtccacagctgatg
ggtggtccagccaaagacgaacaactaccacaggccaagagtcagatgctacccacggat
accatagctacaatgttgtcctgtctacagcactgtgccagccaagtttcccaggagttg
tcagaggctatacttaccatggtagcgaatgccagtatgatcctaaacaaagcgagacaa
gcaccaccggtaccgaaatccaacctaccaccaactctgctgaaccaaccaacctcacag
tcaaatctgctggacagtttggacaatgcaaacacactcggaattcccaaatcatggggc
atgtcaggggtcaactcgggcttcccccagaaccttacctccctgagcacgacagctaca
ccaggatccccagctaagggagctggcttccaacctatctcacaacccagtggcttcggg
gccatgcagaacatcacaaaccagctacaaagtctgtccatgtccaaccccatgggagta
ccaccaaggaatcccagtgtaaatacattgggaactataagctcccaggcagtaatcaaa
cagcaacagcaacaacaagtacagcagcagcagcagcagcaacagcaacaacaacagcag
cagcagcaacagcagcaacaacaacaacaacaacaacaacagcaacagcagcagcaacaa
ctacgagcaggagggatgtcacaggttagtggtgagatgtctaccattttccccgacatg
tcgcagcaatttacacgggaggttgaggatgaggccaactcgtatttccagaggatctac
aatcagcatccccaccctaccatgtctattgacgaggtgcttgacatgctgaaacgcttc
aaggactcgcccaacaggagggaaaaggatgtgtacgagtgtatgctacgtaatttattt
gaggagtatcgattcttcccccaataccctgagagggagctgcatattactgctgttttg
tttggagggatcattgaaaagggactagctacatacatggcacttggtattgccctgaga
tatgtgctggaggccttgaagaaacagctcaattctaaaatgtattacttcggaattgct
gcccttgaccgcttcaagacgagactgaaggactacccccagtactgtcaacatctggcc
gccattccccatttccagcagttcccgcagcatctgattgagtttgttgaatatggggca
agatcacaagagcctccagtgattccttccatatcacgaacgatgaccccgacagcagtt
ggtggggtatcgtttacagggaccgcaccgacagtgactcctacaccaaccagtgctgcc
atttcatctgcagaagggccgatgccaccggtgcttgccccagcccctgccgctgcccct
acccctgctgctgtcaccacgacaaccacagctaccacaacagctgtaacaacggggacc
accaagccaagcagcttacctaagccgtccatcgcaagtgctacaaacatcgacaccctc
ctagcgggtcagggtaatgaggaatcctctataccgccagagtcagttcaggacaaagtc
ttcttcatcttcaacaatctgtctttggccaacatggtccagaaggcggaggagttgagg
aaggagattactgaagactactattgttggtctgcccaatacctggtgatgaagagggcc
agcattgagcccaacttccacaccctgtacgcaaacttcctagatgccctgcagatcccc
gacattgctcatatggtcataagggagacctttaggaacatcaaggttttgctgcgaagt
gacaaaggggatgccaacttctcagacagaactctgctcaagaacctcggtcattggctc
ggcatgttgacgctggccaaaaacaaacctattttgcagattgacatagatctgaaggcc
ctgctgtacgaggcttatcacaagggagctagagaactattgtatgttgtccctttcaca
gccaaggtgcttgagtcgtgtgccaaaagcaaggtgttccgccctccaaatccatggacg
attggaataatgaatgttttagcagaacttcaccaggagccagatctgaagttgaacctc
aaatttgagatagaagtgctttgtaaaacattgacactggatcttaatgagctgaaccca
agtacgtacctgaaggacacatcacgaatatctaccactgagccccagctctccaacatg
gttaagagtatgccgccaccacccatgccaataccacagcctgagcagcccttggtccag
ctcacggccccagtccccactcccccagtttccactacatctgtcgcctctaccgtcacc
acaacaacgcccaacatgccacccaggccacagtttgcatttgatgaagttgtgactgca
aatctcaacagtattggatctcacattgtgacaagtgaccagattccactgtttcaagga
aacccgaaccttaagcagctagtgaagatagccttggagaagtctatccaggaactcctg
ccccctgtggtagagcgtaccataaaaatcacactgcagacctgtgaacagatcatcaag
aaggactttgcccttgatcccgaggagaaccggatgcgagcagcagcccaccacatggta
cgcaacatgacagctggtctggccctgatcacatcccgggaacccctctacctcagcatc
aacaacaacctcaagagtgcttttatgaccacgctcagagtgaatgagggtgctacacag
gcacagaaggagatgatcgaacaagctgcccagcttgtggcccaggaaaacacagaactg
gcctgtgtgtttatacagaaaacagctgtggaaaaggcaatacccgaaatagacaagcga
ctagctactgagtttgatctccgcaaacatgcaaggtcagaaggacgaagatactgtgac
ccagtcatactgacataccaggctgaacgcatgccggagcaaatccgactcaaggttggt
ggggtgactgctggacagatcgctgtatatgaggaattcgcccataacatcccgggtttt
cagcctaccaacgacccatcactgcctcctggtgtaccaaagccagtaccaacctattct
attgatgacctgacccagatcctagaccgtatcaggcgtgatatggaacagtatatgcag
cacttgatgggaatccccaccagtaacccgctggtggtccaactccacagtctgctggag
gctgtcctcctagcccgcaacaaccgagaggttgtcacctccattgctcttcttcagaag
gcggttgaaggtctactggatcactacacattctcccagctgtctaccgaccaagaccta
ctggtgcgcttcagggactgcaacctgatggtgctgaagagtttacaggaccagagggcc
tatggaccccagtggaccaacaaacaggttaccaggtgtttgattgaggtcggaggagac
aacaaatacaacgcggacgctgtagactgtctgatacgttcaggactggtcagcatgcag
cagtacgacctgtacctggtccaactcatggaaaacggactcaactacgtgggagtgatg
ttcaccatgcaactggtgcagcgctactgtgtagacgataaggccaacagtcccgtcaca
gaggtggactttgccaacaccattgaggccctgacacaggtgaacacacgtaaccagagg
cctcctgagggactttcccagatgctagaaggtctacaccccccagtggattttggtctg
ttagaacgtgccataggaggccccacttccatgatgcagtctgggatatcccaggcacgg
gaactagacgaccctccagggctccatgaaaagactgagttcctactgcgagaatgggtc
aatatgtatcactcacctgctgctggtcgggacagtactaaggctttcactgcttttgtg
caacagatgcaccagcagggaattctgaagactgatgatctcatcacacgattcttccgt
ctttgtacggagatgtgtgtggacctgtgttatcgcgctctcggtgaacaatcacagaac
cctgctctagtccgtgccaagtgctttcacacactcgacgcttttgttagactcattgcc
ctcctcatcaaacactcgggtgacactgctaacacggtcaccaagatcaaccttctcaac
aaggtgttgggtatcgtggctggagtactactgcaggaccacgctgtccgccaatccgag
ttccagcagctgccctatcatcgcatcttcatcatgctctttattgagctaaatgctcca
gaacacatccttgagaacattaatttccaagtgctcactgcattctgcaacacattccat
gtgctaaggccagccaaggctcctgggtttgcctatgcctggctggagcttctctcacac
cgagtgtttattgggcgactgctggccctaacaccccaacaaaagggctggggaatgtat
gcacagttgctgctcgatttgttcaagttcttgaccccgttcttacgcaatgctgagctg
acaaagccaactcaactcctgtacaagggtacattacgggtcctgttagtgctgctccat
gacttccccgagttcctgtgtgattaccattatgccttctgtgatgtcatcccaccaaac
tgtattcagatgcgcaatctcattctgagcgcattcccgcgcaacatgcgattacctgac
ccattcacaccaaatctcaaggtggacatgttggctgacatcgcacatccaccccgcata
cttaccaactttgccaagatgattgagccagcctcctttaagaaggacttggactcctac
ctgaagacaaggtcgcctgtcaccttcctgtctgagcttcgtagtaatctacagctgaac
gagccagggatgcggtacaacatcccgctgatgaacgcactagtgctgtatgtcgggaca
cagtccatccaaaatatccacagcaagggcctcaccccgagcatgtctaccattattcac
tcggctcacatggacatcttccagaacctgggtgtggaccttgacacagagggtcggtac
ctgttcctgacgtccatctccaaccagctacgatatcccaacagccatacttactacttc
agctgtacgctactctacctgttcgcagaggctaatactgaggccatacaggaacaaatc
acaagggtgctacttgaaaggttgattgtaaacaggccccacccatggggattacttatc
accttcattgaactcatcaaaaacccacagttcaagttctggaatcatgagtttgtacac
tgtgctccagagattgaaaagttatttgagtcggtagcccgttcgtgtatgcagcccaaa
acaggacagagtctgagagaggcggaaacaaacgaaattcactga
DBGET
integrated database retrieval system
