Mizuhopecten yessoensis (Yesso scallop): 110453555
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Entry
110453555 CDS
T05079
Name
(RefSeq) ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110453555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110453555
03036 Chromosome and associated proteins [BR:
myi03036
]
110453555
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110453555
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110453555
mRNA degradation factors
5'-3' decay
Decapping complex
110453555
Chromosome and associated proteins [BR:
myi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110453555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
110453555
NCBI-ProteinID:
XP_021358211
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MATAKVDQNSSNHHHSIPMAMDGIKSGNSDGNSDQGWKSKLNLPPKDTRLKTTDVTNTKG
NEFEDFCLKRELLMGIFEKGWEQPSPIQEASIPIALTGRDILARAKNGTGKTGAYTIPII
ERCDTGRNEVQALVIVPTRELALQTSQICIEISKHIGCKVMVTTGGTNLKDDIMRLYEPV
HIIIATPGRILDLMNKRLVKIGKCGMLVLDEADKLLSQDFKGMLDNIISHLPNNRQILLY
SATFPLSVEQFMRKHLDSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQ
SIIFCNSTNRVELLAKKITELGYSCFYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTR
GIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGVAINLITYDDRFSLHRIESELGTE
IKPIPKNIDKSLYVAEFHQERDEDDDDVPHNSHGAKGGQ
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccaaagttgatcaaaactcgagtaatcatcatcactccattccgatggca
atggatgggatcaaatctggcaacagcgatggtaatagtgaccagggatggaagagtaaa
ttgaatcttcctcctaaagatacccgtttaaagactactgatgttacaaacacgaaagga
aatgagtttgaggacttttgtctgaaaagggaactccttatgggtatatttgagaagggc
tgggaacaaccatcacccattcaagaagcaagcatccccattgcccttacagggcgcgac
attctagctcgagctaagaatggtactggaaagactggtgcatacaccattccaatcata
gaaagatgtgacaccggtcgcaacgaggtacaagcccttgtgatagttcccacccgagag
ttggctctacagaccagtcagatttgtattgagataagtaaacacattggatgtaaagtg
atggtcacaacaggaggaaccaaccttaaggacgacataatgagattatatgaacctgtc
cacattatcattgccacacccggcagaattctagacttgatgaacaaacgattagtgaag
attggaaaatgtggcatgcttgttctggatgaggcggacaaactgctgtctcaggatttc
aaggggatgttggacaacattatcagccacctacccaacaacagacaaatactcctgtac
tctgctaccttccctctcagcgttgagcagttcatgaggaagcacctcgacagcccctat
gaaatcaacttgatggacgagctgacgctgaagggagttacccagtattatgcttttgtt
caggagaaacagaaggttcactgtctcaacacactgttctcaaagttacaaatcaaccag
tccatcatcttttgtaattccacaaatcgtgtggaacttctagccaaaaagatcacagaa
cttggttactcttgcttctacatccacgccaagatgaaccagcaacacagaaacagagtc
ttccatgacttcaggcagggactctgtaggaatctagtgtgctcagatttgttcacgaga
ggaattgacatccaggctgtgaatgttgttatcaactttgatttccccaagcacgcagag
acatatctccacaggattggtagatctggtcggtatggccaccttggagtcgccatcaac
ctcattacttacgatgacaggttttcattacacagaattgagagtgagctgggcacagag
atcaaaccaatcccaaagaatatagacaaatccttgtatgtggccgagttccaccaggag
agggatgaagatgatgatgatgtcccgcacaactcccatggggctaagggaggacaatga
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