Myroides sp. ZB35: BK054_09680
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Entry
BK054_09680 CDS
T04543
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
myz
Myroides sp. ZB35
Pathway
myz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK054_09680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myz03019
]
BK054_09680
03400 DNA repair and recombination proteins [BR:
myz03400
]
BK054_09680
Enzymes [BR:
myz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BK054_09680
Messenger RNA biogenesis [BR:
myz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BK054_09680
DNA repair and recombination proteins [BR:
myz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BK054_09680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3870
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
APA92479
LinkDB
All DBs
Position
complement(2137006..2138898)
Genome browser
AA seq
630 aa
AA seq
DB search
MTTPIEILQKYWNYDSFREPQKDIIDSVLAKNDTFALLPTGGGKSICFQIPTLLLPGTCL
VVSPLIALIEDQVNNLNKLNIKATSIIGGTPMHEIDAIFDNCLYGNYKFLYISPERLKQT
WILERIEKLKISIIAIDEAHCISQWGHDFRPAYLELGKLRDVFPEVPIIALTASANKKVI
EDICTNLKLNSPKLFTKSFLRENLIYGVYKVENQLNMVLRILQKNPAPTIIYVRNRKEAY
FFSNQLNQMNYKATFFHGGLSIIEKKKRMQDWIEEKTPIMVATNAFGMGIDKKNVKNVIH
IQIPENIENYYQEAGRAGRDGNKAFATMLVTPQEIKQNSEMFETNLFDKEFLKRIYRKLN
NFLSIAYGEGYNCTYSLNFNKFCSHNNFPHRRAYNALQFLDRQGIIRLLENSKNKTKLLF
TAPSSEILDITYDNESYENIIHFILRTYTGIHEYEQDLDLHLIEQHTGESQESIIACLKD
CHDQNLCNYIPEENDLTVIFNEAWEEDRVLYRTFPYLKQQNEQKINQYKSLLFYIENEDI
CKNKILLKYFDENKTTDCGTCSTCISNKKKHKTSSVIIDNIFKILLHTPSTIQQLEVEHG
IDKEDIIYSLQVLQEQNKIKINLENQYLVI
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaccaattgaaattcttcaaaagtactggaactacgacagttttcgagagcca
cagaaagacattatagattctgtcctagcaaagaatgatacttttgctttacttcctaca
ggtggaggaaaaagtatctgctttcagattcctacacttctattaccaggcacatgttta
gtagtttcccccttgatcgctctaatagaagaccaagtcaacaatcttaacaaacttaat
ataaaggctacttctattataggaggtacgccaatgcatgagatagatgccatatttgac
aattgcctatatggaaactataaatttctatatatatcacctgagcgattaaaacagact
tggattcttgaacgaatagaaaagcttaaaatcagtattatagccattgatgaagcccat
tgtatctctcaatggggacatgactttagacctgcttatctagaattaggaaaattacgt
gatgttttccctgaagtacctattattgcactgacagcatctgctaataaaaaagtaata
gaagacatctgcacaaatcttaaacttaattctccaaagctattcacaaaaagctttttg
agagagaatctaatatacggtgtatataaggtagagaaccaattaaacatggttctacgc
atattacaaaaaaatcctgcaccaacaatcatctatgttcgcaatagaaaagaagcttat
ttcttctctaaccaattaaatcaaatgaattataaagctactttttttcatgggggctta
tctatcattgaaaaaaagaaaagaatgcaagattggatagaagaaaaaacacctattatg
gtagcgactaatgctttcggaatggggattgacaaaaaaaatgtaaagaatgtaatccat
atacagatacccgaaaacatagagaactattaccaagaagccggaagagcaggacgagat
ggtaataaagcatttgctactatgctagtcactccacaagaaatcaagcaaaacagtgaa
atgtttgaaacgaatctctttgacaaagagtttcttaaacgcatctatcgaaaactcaat
aactttctaagtattgcttatggagagggatacaactgtacttacagtttaaatttcaat
aaattctgtagtcataataactttccacataggagagcttataacgcactacaattctta
gatagacaaggtatcattcgactattagaaaacagtaaaaataaaactaaactgctcttt
actgctcctagtagtgaaatactagacataacgtatgacaatgaaagttacgagaacatc
attcacttcatactacgtacttacacaggaatacacgagtacgaacaagatttagattta
cacctaatagaacaacatactggcgaaagtcaagagagcattatcgcttgtttaaaggat
tgtcatgaccaaaacttatgcaactacattcctgaagaaaacgatcttacagtgatattc
aatgaggcttgggaagaagacagagtactataccgtacatttccatatcttaaacaacag
aacgaacaaaagataaatcaatataaatctctcttattttatattgaaaatgaagatatt
tgtaagaacaaaatactgctaaagtattttgatgaaaacaaaacaactgattgtggtact
tgttctacatgtatatctaataaaaagaaacataaaactagtagtgttattattgacaat
atatttaaaattctattacatacacctagcactattcaacaattagaagtagagcatggt
atagataaagaggatataatatattcactacaagtactacaagaacaaaataaaataaaa
ataaacctagaaaatcaatatttagtaatatga
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