Maylandia zebra (zebra mbuna): 101486947
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Entry
101486947 CDS
T02814
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X7
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101486947 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101486947 (cnot1)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101486947 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101486947 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101486947
NCBI-ProteinID:
XP_004569235
LinkDB
All DBs
Position
LG7:1373377..1404206
Genome browser
AA seq
2374 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTRMESSLAEFIQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQTHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQVVVYGIQRGLGIESFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQITTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSTLDAISPVQMDPLSGIGGL
NLGPSATSLNPSISFPTPVNTPFNNPQSPAKAFPPLPNPNPSTPFGSISGLPSQLPGPLG
TGIGPGLGMPAGSTDPFGPRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALVQAQAQSQQP
AGLKAPQPGQPSTLVTTTTTTPTASKTSTIARPTATNFKKDVPPSINTTNIDTLLVATDQ
TERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPN
FHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITL
AKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSMVFRPQNPWTMAIMN
VLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKNLEEQLSAPKKEAK
PPEEMLPVSTAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALAGLAPHININVNIPLL
QAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVAAHH
MMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRDMMEEAAARIAQENCELA
CCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGG
VDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCIADLEQH
LHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADLLL
RYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQY
DLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRANA
PEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPA
ASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQ
TEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYV
GTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH
YFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDF
VHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaggaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaaaccaaattttatctctactctgtgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgctcacttattcactcaattgagcaaagttcttaag
ctcagcaaagtccaagaggttatatttggccttgctctgctcaactccagcaacacagac
cttcgtggctttgctgctcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcagatcttggaggaaaccaagaaggtggcttccaagacattgccatagaggtg
ctgcacctactgctctcccatctactgtttggacagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaaaacactttgccgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
cctgactcgggggagttagctaagaccaggatggagagttctcttgcagaattcattcaa
gaagttggctatggtttctgtgctagtctggacgagtgcagaaacataatcgttcaatat
ggggtgagagaggtgacggccagccaggtagccagggtcctgggcatgatggctcgtacc
cactctggtctaactgacggcatcccactacagtctatctctgctccaggaagcggtatc
tggagcgatgggaaagataagaacgatggttcgcagacacatacgtggaacgttgaggtc
ctcatcgacattgtcaaagaagtgaatcccaatctcaacttcaaagaggtgacatatgaa
ctggaccacccgggctttataatccgagacagcaaaggcctgcaggtagtggtgtatggg
atccagagagggctgggcattgaaagttttcctgtggatctcatctatcggccttggaaa
catgctgagggacagttgtcattcattcaacactccctgatgaacccagacgtgttttgc
tttgctgactacccttgtcacactgtggccattgacatcctcaaggccccaccagaggat
gacaatagagagattgccacatggaaaagtctggatctggtggagagtctgcttcgactg
tctgaggtgggccagtatgagcaggtgaagcagctgttcagcttcccgatcaaacactgc
cccgacatgttggtgctggcgttactgcagattaccacctcgtggcacacactgcgccac
gagctcatctccaccctgatgcccatctttttgggaaatcaccccaactccgccattatc
ctgcactatgcctggcatggacagggacagtctccttccatacgtcagctaattatgcat
tcgatggctgaatggtacatgagaggggagcagtatgaccaagcaaagttatctcgcatc
ctggatgtggcccaagacttaaagtctctatcaatgctgctgaatggtactccgtttgcc
tttgttattgatctcgctgcacttgcctcgcgtcgtgaatacctcaaactcgataaatgg
cttactgacaaaattagagagcacggggaacctttcatccaagcttgtgtgacgttcttg
aagaggcgctgtccatccattatggggggtttggctcctgataaggaccagcccaaaagt
gcccagttgcctccagagactctagccaccatgctggcctgcttgcagtcatgtgctggc
agtgtatcccaggagttgtcggagactatcctgacgatggtggctaattgcagcaatgta
atgaataaagcccgacagccaccaccaggtgtaatgccaaagggacgtgccccgagcacc
agcaccctagatgccatctcacctgtacagatggaccctctgagtggcattggcggtttg
aatttggggccctcagctacttccctcaatccaagcataagtttcccaaccccagtgaat
acacctttcaataatccccagtctccagcaaaagcctttccaccacttcccaatcctaat
cccagcacaccttttgggagcatttccggcctgccctcacaactccctggtccactgggc
acgggcatcggtcctggtctagggatgccagcagggagcactgatccttttggtcccagg
aagatgagcacaccgggcctgaacccaccaacctttcagcagagtaagatgaaggcctcc
gacctttctcaggtgtggcccgaagcaaaccagcactttagtaaggaaatagatgacgaa
gcaaacagttacttccagcgcatttacaaccacccacctcacccaaccatgtctgtggat
gaagtcttggaaatgctgcaaaggtttaaggattctaccatcaagcgggagcgagaggtg
ttcaactgcatgcttcgaaacctgtttgaggaatacagattcttcccccagtacccagac
aaggagctgcatatcactgcctgtctttttggtggaataatcgagaaaggtctcgtcact
tacatggccctgggtttggccctccgatatgttcttgaagccttacgaaaaccgtacgga
tccaaaatgtattactttggaattgctgccctagatcggttcaaaaacaggctaaaggac
taccctcagtactgtcagcacctggcttcaattggtcacttcttgcaattcccccaccat
ttacaagagtatattgagtatggacaacagtcacgggaccctccagtgaagatgcagggg
tccatcaccacacctgggagcctggctctagtacaagcccaggcacagtcgcagcaacct
gccggccttaaagccccacagccaggccagcccagcaccctcgtcacaaccaccacgact
acacccacagcctctaagacgtccacgatcgcaaggccgacagccactaacttcaagaag
gatgtgcctccctccataaacactaccaacattgacaccctgctggtggctactgaccaa
acggaaaggatcgtagaacctccggagaatgtccaggagaagattgcttttattttcaac
aacctttctcaatccaacatgactcagaaggtcgaggagttgaaagagacggtgaaagag
gagttcatgccctgggtgtctcagtacctggtgatgaagcgagtcagcatcgagcccaac
tttcacagcctctactcgaactttttggacacactgaaaaaccccgagtttgtgaagatg
gttcttaatgaaacctacaggaacatcaaggtgcttctgacctcagacaaggcagctgcc
aacttctctgatcgctccctgctgaagaaccttggccactggttaggcatgattacactg
gccaaaaacaagcctatcctttatacagatctagaagtaaagtctttgctactggaagct
tatgtgaaaggccagcaggagctgctctatgtggttccctttgtggccaaagttttggag
tccagcgtgcgaagcatggttttcagaccccagaatccttggactatggccatcatgaat
gttctcgctgagctgcatcaggaacatgacctgaagttgaatttgaagtttgagattgaa
gttctgtgtaagaacttatctttggacatcaacgagctgaagccaggaaacctgctgaag
gacaaggagaagctaaagaacctcgaggagcagctatcggcaccaaagaaggaggcaaaa
cctccagaggagatgctgccagtctctactgcagctcctccctccaccccagctgcaacc
accaccacttgtacaacgaccgggccgcccaccccgcagtttagttaccatgacatcaat
gtgtatgcattggcaggcctggctccccacatcaatataaatgtcaacatccctctgctg
caggctcatcctcagctaaagcaatgtgtgcgtcagtcagtggagcgtgccgtccaggag
ctggtgcaccctgtggtcgatcgctctatcaaaatcgcaatgacgacctgtgagcagatc
atcaggaaggacttcgctctggattctgaagagtcccgcatgcgtgtggctgcgcaccat
atgatgagaaacctgactgctggcatggccatgatcacctgccgtgagcctctgctcatg
agcattgccaccaaccttaagaatagctttgctgcagctctgagggcaccaacaccccaa
cagagggacatgatggaagaggctgcagccagaattgctcaagaaaactgtgaacttgct
tgctgtttcattcagaaaacggcagtggagaaggctggccctgaaatggacaagagacta
gccacggagtttgagctgaggaagcatgcacgccaggagggacgtcgctattgtgatccc
gttgttctgacttaccaggctgaacgtatgccagagcagatcaggctaaaggtgggagga
gtggaccctaagcagctggctgtgtatgaggagtttgctagaaacgttccaggtttcttg
ccaagtaatgacctttcccaaccaactggcttcttggctcagcccatgaagcaacaggca
tgggcgacggatgatgttgctcagatctatgataagtgcatagcagacctggagcagcat
cttcatgccatccctccagcgcttgccatgaaccctcttacccaggccttgcggagcttg
ctggaagctgtggctctggctagaaactccagggatggcattgcagcgcttggcttgctg
cagaaggctgttgaaggtcttctggatgctacaagtggcgccgatgccgacttgctgctt
cgctacagggagtgccacttgttggtgcttaaagccctgcaggatggacgtgcctatggc
ccacagtggtgcaataagcagatcaccaggtgtctgattgaatgccgtgacgaatacaag
tacaacgtcgaggcggtggagcttttgatcaggaaccatcttgtaaatatgcagcagtat
gacctgcacctagcacagtcaatggaaaatggactgcactacatggcggttgcatttgcc
atgcagttggtgaagctgctgctggtggatgaacgcagtgtgagccacgtcacagaagct
gacctcttccacacaattgagactttgatgaggacctgtgcgcactccagagctaatgca
cctgaggggcttccccagttgatggatgtggttcgctccaactatgaagccatgattgac
cgggcccacggtggacccaacttcatgatgcactctgggatttcacaggcatcagaatat
gatgatcctccaggcttgagggagaaagcggagtacctcctgagggaatgggtcaacctg
tatcactccgctgctgctggcagggatagcaccaaagctttctctgcctttgttggccag
atgcaccagcagggaattctgaagacagatgacctgatcactcgcttcttccggctgtgc
acagaaatgtgtgtggagattagctatcgggcacaagctgaacaacagcacaacccagca
gccagtgcagccatcatcagagccaaatgttaccacaacctggatgcctttgtgaggctc
atagccctgctggtgaaacactctggagaggccaccaacacagtgacaaaaatcaacctc
ctcaacaaggtgctcggtattgtagttggcgtgttgatccaggaccacgatgttcgtcag
actgaattccagcagctgccgtatcaccgcattttcatcatgctgctgctggagctcaac
gcccctgaacatgtcctggaaaccatcaacttccagacactcactgccttctgcaatacc
ttccacatcctgagacccaccaaagcacctgggtttgtgtacgcctggctggaactgatt
tctcatcgcatcttcattgccaggatgcttgcacacaccccgcagcagaagggttggccc
atgtacgcacaactgttgattgatcttttcaagtacctggcccctttcctgaggaacgta
gagctcaacaaacctatgcaaatcctctacaagggcacactgcgagtgctcctggttctg
cttcacgacttcccagagtttctgtgcgattaccattacggcttctgtgacgtcatccca
cccaactgcatccagctccgcaacctcatcctcagtgcctttccacgcaacatgaggctt
cctgaccctttcacacccaacctgaaggtggacatgctgagcgagatcaacatcgctccg
cggattctcacaaacttcacaggcgtgatgccgtcacagttcaaaaaggatctggactcg
tatctgaagacgcgctcacctgtgacgttcctgtcggagctccgtagtaacctgcaggtg
tctaatgaaccaggaaaccgctacaacatccagctgatcaatgctctagtgttgtatgtg
gggacacaggcaatcgctcacatccacaataagggcagcaccccctccatgagcaccatc
acccactccgctcacatggacatcttccagaatctggctgtggacctggacactgagggg
cgttacctgttcttgaatgcgatcgccaatcagctgcgttaccccaacagtcacactcac
tacttcagctgcacgatgctctatttgtttgccgaggccaacactgaggccatccaggag
cagatcaccagggttctgttggagaggctgatagtgaacaggcctcacccgtggggtctc
ctcatcaccttcatcgagctgatcaagaatcctgccttcaagttctggagccacgacttt
gtgcactgtgcgcctgagattgaaaagctgtttcagtctgtcgcccagtgctgcatggga
cagaagcaggcccagcaggtgatggagggcaccggtgccagttag
DBGET
integrated database retrieval system
