Candidatus Nanopelagicus abundans: B1sIIB91_00520
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Entry
B1sIIB91_00520 CDS
T05091
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nab
Candidatus Nanopelagicus abundans
Pathway
nab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B1sIIB91_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nab03021
]
B1sIIB91_00520
03400 DNA repair and recombination proteins [BR:
nab03400
]
B1sIIB91_00520
Enzymes [BR:
nab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B1sIIB91_00520
Transcription machinery [BR:
nab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B1sIIB91_00520
DNA repair and recombination proteins [BR:
nab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B1sIIB91_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASY23420
UniProt:
A0A249L2V1
LinkDB
All DBs
Position
103788..107240
Genome browser
AA seq
1150 aa
AA seq
DB search
MAASKIKSQAPARVSFAKIREPLEVPNLLSLQLESIDWLLGNEAWRARLSTAEKSNRGEV
PKQSGLEEIFEEISPIEDFQGSMSLSFRDHRFEPPKYTIAECKERDITYAAPLFLTAEFT
NNITGEIKSQTVFMGDFPLMTPRGTFVINGTERVVVSQIVRSPGVYFERTIEKTSDKDVY
TTKIIPSRGAWLEFEVDKKDMVGVRIDRKRKQSVTVFLKALGWSSAQILEQFGEFESIKL
TLEKDNVETQDEALLDIYRKLRPGEPPTKEAAQNLIENLYFNPKRYDLAKVGRFKVNKKL
GLELDLNRGLLTIEDIVGTIKYLVALHRGDALMEYGKEVRVETDDIDHFGNRRLRTVGEL
IQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTN
PLSGMTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLATYA
RVTPFGFIETPYRKVVDGKVSDRIDYLTADEEDEHIIAQANAPLTDDNFFAEPRVLVRRR
GGEVENIQASEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLVRAEAP
LVGTGMEFRAAVDAGDVLLARKSGVVTEVNSDEVTVKNDDGTTETYFVEKFVRSNQGTSR
NQKVVVSVGEKIEVGAVVADGASTEMGEMALGKNLLVAFMSWEGHNYEDAIILSQRLVQD
DVLTSIHIEEYEVDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRVGADVVPGDILVG
KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVSIQDSEEGFELAAG
VNQVVRVYVAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPG
RMNVGQVLETHLGWVAKSGWKLEGNEDWQQSLRANGYAEAPANTKVATPVFDGTKEEELS
GLLGSTLPNKDGMRLIGPDGKAQLYDGRTGEPYKQPISVGYMYILKLHHLVDDKIHARST
GPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTIKSDDVLGRVKVYEAI
VKGENIPEPGIPESFKVLVKEMQSLCLNVEVLSSEGVAIEMRDTDEEVFRTAEELGINLS
RVEPSSVEEV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcttcaaaaattaaatctcaagcaccagcacgtgtttcattcgcaaaaattcgc
gaaccacttgaagttccaaatctactttcattacaactagaaagtattgattggttactt
ggtaacgaagcatggcgcgctcgcttaagcaccgctgaaaaatcaaatcgtggcgaggtt
cctaagcaatctggacttgaagaaatttttgaagagatctcaccgattgaagatttccaa
ggatcaatgtcactctcatttcgtgaccatcgctttgaaccacctaagtacacaattgca
gagtgcaaagagcgcgacattacctacgctgctccacttttcttaactgcagagtttaca
aacaacataacaggtgaaattaaatctcagacagtttttatgggcgacttcccattaatg
acacctcgtggaacatttgtaattaacggaactgagcgcgtagttgtttcacagattgtt
cgctcacctggcgtttactttgaacgcacaattgaaaaaacatctgataaagatgtctac
acaacaaagattattccaagccgtggtgcttggcttgagtttgaagtagataagaaagat
atggtcggtgttcgtatcgatcgcaagcgtaaacaatctgtcacagttttcttgaaagca
cttggttggagtagtgcacaaattcttgagcaattcggagaatttgaatcaattaagtta
actcttgaaaaagacaatgttgaaactcaagatgaggcattgctagatatttatcgcaaa
cttcgtccaggtgagccaccaactaaagaagctgctcaaaacttaattgaaaacctttac
ttcaatccaaagcgttatgacttagcaaaagttggccgttttaaagttaataagaagtta
ggactagagcttgatctaaaccgtggcctattaactattgaagatattgttggaacaatt
aaatacttagtagcacttcaccgtggtgatgcgttaatggagtacggcaaagaagtacgt
gttgaaactgatgatattgaccattttggtaatcgtcgcctgcgtaccgtcggtgagtta
attcaaaaccaggttcgtaccggtctttctcgaatggagcgcgtagttcgtgagcgtatg
actactcaagatgttgaagcgataactccacaaactttaataaatattcgcccagtagtg
gcatctattaaagagttctttggaacatcacaactttcacaatttatggatcaaacaaat
ccactatctggtatgacacataagcgtcgtctatcagcacttggacccggcggactttct
cgtgaacgcgctggctttgaggttcgagatgttcacccatctcattacggtcgtatgtgt
ccaattgaaacaccagagggtccaaacattggacttattggatctcttgcaacatatgca
cgtgttacaccatttggttttattgaaactccttatcgcaaagttgttgatggcaaggtt
tctgatcgcatcgattacttaactgctgatgaagaagatgagcacattattgcgcaagca
aatgcacctttaactgatgataatttttttgctgagccaagagtattagttcgccgtcgc
ggtggtgaggttgaaaatattcaagcatccgaggttgattacatggatgtgtcacctcgc
cagatggtttcagttgcaactgcaatgattccattcttagaacatgatgatgctaaccgt
gcgttaatgggtgcaaacatgatgcgtcaggctgtgccacttgttagagctgaagcacca
ctagttggaactggcatggagtttcgtgctgcagtagatgctggtgatgtattacttgct
cgcaaatctggtgtggtaactgaggttaactctgatgaagtaactgttaaaaatgatgac
ggtacaactgaaacttactttgttgagaagtttgttagatcaaatcaaggaactagccgt
aatcaaaaggtagttgtttctgtgggagaaaagattgaagttggcgcagttgtagcagat
ggtgctagcaccgaaatgggtgagatggcgcttggaaaaaatctacttgtggcatttatg
tcatgggaaggtcataactatgaagatgcgattattctttcacaacgccttgttcaagat
gatgtgcttacctcaattcatatcgaggagtatgaagtagatgctcgtgataccaaacta
ggagcagaggaaatcactcgtgatattccaaacgtttctgaggaagtattagcagatctt
gatgaacgcggaatcattcgcgttggagcagatgttgtgccaggtgatattttggttgga
aaagtaacacctaagggtgaaactgaattaacaccggaagagcgcttacttcgcgcaatc
tttggcgagaaggctcgagaggttcgcgatacttcacttaaggttccacatggtgaatca
ggcaaagtaattggcgttagcatccaagattctgaagagggatttgaattagctgctggt
gttaaccaagttgttcgagtctacgttgcacaaaagcgtaaaattcaagatggtgacaaa
cttgctggccgtcacggtaacaagggtgttatttcaaagattttacctgttgaagatatg
ccattcctagaagatggaactccagtagatattgtattaaatccacttggtgtaccagga
cgtatgaatgttggtcaggtactagaaactcacttaggttgggttgctaagtctggttgg
aaactagaaggtaatgaagattggcaacaatcactgcgtgctaacggttacgccgaagca
ccagccaatacaaaggtagcaacaccagtatttgatggaactaaagaagaagagttatct
ggtcttcttggttctactttgccaaataaagatggcatgcgcttaattggcccagatggt
aaagcacaattatatgatggccgaactggtgaaccatataagcaaccaatttctgtaggc
tatatgtacatcttaaagctgcaccatttagttgatgacaagatccatgctcgttcaacc
ggtccttactcaatgattacgcaacaaccgttgggtggaaaagcacaattcggtggacag
cgctttggtgaaatggaagtttgggcacttgaagcatatggagctgcctacacactacaa
gaattgctaacaattaaatcagatgacgtccttggtcgagttaaggtttatgaagcaatt
gttaagggtgaaaatattccagagccaggaattcctgagtcatttaaggttttggttaaa
gaaatgcaatcactttgtttaaatgttgaagttctttcatcagagggtgtggcaattgaa
atgcgcgatactgatgaagaagtctttagaacagccgaagaattaggtatcaacttatcc
cgagttgaaccaagctctgtagaagaagtgtga
DBGET
integrated database retrieval system
