Nautilia sp. PV-1: C3L23_00895
Help
Entry
C3L23_00895 CDS
T05986
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nap
Nautilia sp. PV-1
Pathway
nap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3L23_00895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nap03021
]
C3L23_00895 (rpoB)
03400 DNA repair and recombination proteins [BR:
nap03400
]
C3L23_00895 (rpoB)
Enzymes [BR:
nap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3L23_00895 (rpoB)
Transcription machinery [BR:
nap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3L23_00895 (rpoB)
DNA repair and recombination proteins [BR:
nap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3L23_00895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AZV45872
LinkDB
All DBs
Position
155308..159447
Genome browser
AA seq
1379 aa
AA seq
DB search
MLNQLKSANRLRLDFSKIPQILDIPNLLHLQQNSFQDFINLKEPEKSGIHKVFKSMFPIT
DAQNRITLEYAGIEFKKPKYTVRECMEKGLTYSIPIRIKIRLIVHERDEKTGEKIGIKDI
KEQTLYIRDIPLMTERTSFIINGVERVIVNQLHRSPGVIFKQEEAQNSNKLLYSAQIIPD
RGSWVYFEYDVKDVLYVRVNKRRKVPVTILLRAMDYSKEDILRMFYPIIDIRIRDNKFLM
PTKALQAGKLDYDLKDPDGNIILTAGKRLSDRKLKKIQEELEFVEYPIEILIDRHLAEPI
YDPVTGEVLFDTLTVLNEVKLKKILESQIEDFKIVNDLAEGVDDSILRAFHQDIETLKIL
RQVEGIENENDLARIRIYKVMRPGEPATPQTAKELFDKLFFDPERYDLTKVGRMKMNHKL
GLNVPDDVTVLTYQDIIKTIQYLIGVKNGVGQIDDRDHLGNRRIRSIGELLANRLQDGLA
KMQKTIRDKMTTVTNINDLLPMDLVNTKLVTTTILDFFATGQLSQFMDQTNPLSEVAHKR
RLSALGEGGVTRERAGFEIRDVHPSHYGRICPIETPEGQNIGLVNTLSTYAKVNEFGFIE
APYRVVKDGRVTDEVVYLTATQEEEKTIAPASVKIDEETGEILDDLIEARKDGEIILVDK
KEVDLYDLNPKMIVGVGASLIPFLEHDDANRALMGSNMQRQGVPLLRSEAPMVGTGMEKY
VARDAWQIVKAKRGGKVIKVDAKNIYILGEDENGAYIDHYGLEKYLRTNQNTCFDQRPIV
KEGDVVKAGDVIADGPNMDNGELGVGKNVMVAFMPWNGYNFEDAIVLSERIIKDDVYTSV
HIYEEVCEVRELKHGLEEITADIPGVKPEYLTHLDESGIIKIGTYVKPGMILVGKISPKG
DVKPTPEERLLKSIFGDKSGHVVNSSLYAPASMEGVVIDVKVYTKKGYELDERAKAAYDE
EKAKIEEIYKNQLSIIDKEEVLALANLLANKPLAKDVELNGKTYKAGEKLPKDELVNINK
FLLLSLVEYFDDATVQEFENIKAKYLNEKDNIRKEYDEKLEVLERDDILPNGVAKMVKVY
IANKRKIKVGDKMAGRHGNKGIVSIIVPQEDMPYMEDGRTVDVVLNPLGVPSRMNIGQIL
EVHLGLVGKNLGNQLQKILEEKQADYVNKLREKMKEIVEVAHFGEHYKDFLDSLTNEELL
KYAQDWAKGVKFATPVFEGVNEDEFKKLFELARIPEDGKTQLYDGRTGEPIKERVNVGYM
YMLKLHHLVDDKVHARSIGPYSLITQQPVGGKALFGGQRFGEMEVWALEAYGAAYNLKEM
LTTKSDDVEGRNKAYRALTRGENVPIEGLSETFFVLSKELRALGLDLEFYKKEEDNEEI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaccaattaaaatcagccaatagattaagattagatttttctaaaatcccacaa
atattggatattccgaatttactacatttacaacaaaactctttccaagattttatcaat
cttaaagagcctgaaaaaagtggtattcataaagtttttaagtcaatgtttccgattaca
gatgcccaaaacagaattactctagagtatgccggtatagaatttaaaaaaccgaagtat
actgttcgtgaatgtatggaaaaaggtcttacatattctatacctattagaattaaaatc
agacttatcgttcatgaaagagatgaaaaaacaggtgaaaaaattggtataaaagatatt
aaagaacaaactctttatattagagatattcctttaatgacggaaagaaccagttttatt
ataaatggagtagaaagagttatcgtaaatcagcttcacagaagcccgggtgttattttt
aaacaggaagaagcacaaaattcaaataaactattatattctgctcaaattattcctgac
aggggaagctgggtatattttgaatatgatgttaaagatgttctatatgtaagagttaac
aaaagaagaaaagttcctgtaacaatacttcttagagctatggattattctaaagaagat
attcttagaatgttttatccaattattgatatcagaatacgtgataataaatttttaatg
cctactaaagctttacaagcaggcaagctagattatgatttaaaagatccagacggcaat
atcatattaacggcaggtaaaagactaagcgatagaaaacttaaaaaaattcaagaggaa
ttagagtttgtcgaatatccaattgaaatacttatagacagacatttagctgagcctatt
tatgatccggtaacaggcgaagtattgtttgatacgttaacagtattaaatgaagttaaa
cttaaaaaaattctcgaatcacagatagaagattttaaaattgttaacgatttggctgaa
ggtgttgatgattcaattcttagagctttccaccaagatatcgaaacacttaaaatttta
agacaggttgagggaattgaaaacgaaaacgatttagcaagaatcagaatttacaaagtt
atgagacctggtgaacctgcaacacctcaaacagcaaaagaactgtttgataaacttttc
tttgatcctgaaagatacgacttaacaaaagtcggtcgtatgaaaatgaatcataaattg
ggcctaaacgttcctgatgacgtaactgttttaacttatcaagatattattaaaactatt
caatatctaattggagttaaaaacggggttggtcagattgatgacagagatcatcttggt
aacagaagaattagaagtatcggtgagcttctggcgaacagactgcaagacggtcttgca
aaaatgcaaaaaactatcagagacaaaatgacaactgttacaaatataaatgatctgcta
ccaatggatcttgttaatactaaacttgtaacaacaacgatacttgatttctttgcaaca
ggtcagctttcacagttcatggatcagactaacccgcttagtgaagttgcacataaaaga
agactttctgcacttggtgaaggtggggttacaagagagagagccggatttgaaatcagg
gacgttcatccgagccactacggaagaatatgtccgattgaaacacccgagggtcaaaat
atcggtcttgttaatacactttcaacatatgcaaaagttaacgagttcggatttattgaa
gctccgtacagagtagtaaaagacggtcgtgtaacagatgaagtggtatatctgacagca
actcaggaagaagaaaaaacaatcgcacctgcatctgttaaaatcgacgaagaaacaggt
gaaattcttgatgatttaattgaagcgagaaaagacggtgaaattatccttgtcgataaa
aaagaagttgatctttacgaccttaaccctaaaatgattgtaggggttggagcatcactt
attccattccttgagcatgacgatgccaacagggcattgatggggtcaaacatgcagcgt
cagggtgtgcctctacttagaagcgaagctccgatggttggaactggaatggaaaaatac
gttgcgcgtgacgcgtggcaaattgttaaggctaaaagaggcggaaaagtaattaaagtt
gacgctaaaaatatttacattttaggcgaagacgaaaacggtgcttatattgaccattac
ggacttgaaaaatatctaagaactaatcaaaacacatgttttgaccaaagacctatcgta
aaagaaggcgatgtagttaaagcaggcgacgtaattgccgacggtccgaatatggataac
ggtgaacttggtgtcggtaaaaacgttatggttgcatttatgccttggaacggatataac
ttcgaggatgctattgttctaagcgaaagaattattaaagacgatgtttatacatcggtt
catatttatgaagaagtttgtgaagtaagagagcttaaacacggacttgaagaaattaca
gctgatattccgggtgttaaacctgaatatttaactcatcttgatgagagcggtattatt
aaaatcggtacatacgtaaaaccaggaatgattctggtaggtaaaatttcaccaaaaggt
gatgtgaaaccgacacctgaggaaagactacttaaatcaatcttcggtgacaaatcagga
catgttgtaaacagctcgctttatgcacctgcaagtatggaaggtgttgtaatagacgtt
aaggtttacactaaaaaaggttatgagcttgacgaaagagcaaaagctgcatatgatgaa
gaaaaagctaaaattgaagaaatttataaaaatcagttaagcatcattgataaagaagaa
gttttggctcttgcaaatcttttagcaaacaaacctcttgcaaaagatgtagaactaaac
ggtaaaacttataaagcgggagaaaaacttccaaaagatgagcttgtaaatataaacaaa
tttcttcttttaagtttagtagagtattttgacgatgcgactgttcaggagtttgaaaat
attaaagctaaatatctgaatgagaaagacaatatcagaaaagaatacgatgaaaaactt
gaagttcttgaaagagatgacattctgccaaacggcgtagctaaaatggttaaagtttat
attgccaataaaagaaaaatcaaagtcggtgataaaatggcgggtcgtcacggtaacaaa
ggtattgtaagtattatcgtaccgcaggaagatatgccttatatggaagacggaagaact
gtagatgttgtactaaaccctctgggggttccttcaaggatgaacatcggacaaattctt
gaagtacatcttggacttgtaggtaaaaaccttggtaatcagcttcaaaaaatattagaa
gaaaaacaggctgattatgtaaataaattaagagaaaaaatgaaagaaatcgttgaagtt
gcacattttggtgaacattataaagatttcttagattcacttacaaatgaagaacttctt
aaatacgctcaggactgggctaaaggtgtgaaatttgcaacacctgtatttgagggtgta
aatgaagatgagtttaaaaagctgtttgaactagcaagaattccggaagacggaaaaact
cagctttatgacggaagaacgggtgagcctattaaagaaagagtaaatgtaggatatatg
tatatgttaaaacttcatcaccttgttgatgacaaagttcacgcgagaagtataggacca
tacagcttaattactcagcagcctgtaggtggtaaagcactattcggtggtcaaagattc
ggggaaatggaagtttgggcacttgaagcatacggtgcggcatacaaccttaaagaaatg
cttacaaccaaatctgacgatgttgaaggtagaaacaaagcttacagagctcttacaaga
ggagagaacgttccgattgaaggacttagtgaaacattctttgtattatctaaagagctt
agagcgcttggacttgatttagagttttataaaaaggaagaagacaatgaagaaatttaa
DBGET
integrated database retrieval system
