Nocardioides aromaticivorans: CFH99_08760
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Entry
CFH99_08760 CDS
T07236
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFH99_08760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naro03400
]
CFH99_08760
Enzymes [BR:
naro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFH99_08760
DNA repair and recombination proteins [BR:
naro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFH99_08760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSR25712
LinkDB
All DBs
Position
1766881..1767798
Genome browser
AA seq
305 aa
AA seq
DB search
MPKKPEHPQTEVHVDVEGRTLRLTNLEKVLYPSTGTTKGEVLDYYARVAPVLLPHLAGRP
VTRIRWPHGVGDMSFFEKNAPAGTPSWVRTAEVPTTGSRGPSRHGDTLRFPIIDQLATLV
WAVNLAALELHVHQWTVDDDGDPVGADRIVIDLDPGEGAGLHECCGVALLVRDVLAERGY
DALPVTSGSKGLHLYAPLDEPLPSDETSAIAKEIAEELQAAHGSLVTATMTKARRRGKVF
LDWSQNAGSKTTVAPYSLRGTPRPQVATPVTWDEVAEGADDPLGLDQFSMAQVLERVEQY
GDLFA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagaagcccgagcacccgcagaccgaggtgcacgtcgacgtcgagggacgcacc
ctgcggctgaccaacctcgagaaggtgctctacccgtcgaccggcaccaccaagggcgag
gtgctcgactactacgcgcgggtcgcgccggtgctgctgccgcacctcgccggccggccg
gtgacccggatccgctggccgcacggtgtcggcgacatgagcttcttcgagaagaacgca
cccgccggcaccccgtcgtgggtccgcacggcagaggtgccgacgacgggcagccgcggg
ccgagccgccacggcgacaccctgcgcttcccgatcatcgaccagctcgcgacgctcgtg
tgggcggtgaacctcgctgcgctggagctgcacgtgcaccagtggaccgtcgacgacgac
ggcgacccggtgggtgcggaccggatcgtgatcgacctcgacccgggcgagggcgccggc
ctccacgagtgctgtggcgtcgcgctgctcgtgcgcgacgtgctggccgagcgcgggtac
gacgccctcccggtcaccagcggcagcaaggggctgcacctctacgcacccctcgacgag
ccgctcccgtccgacgagaccagcgcgatcgccaaggagatcgccgaggagctccaggcc
gcgcacgggtcgctcgtcaccgcgaccatgaccaaggcccggcgccgcggcaaggtgttc
ctcgactggtcgcagaacgcggggtcgaagaccaccgtggcgccgtactccctgcgcggc
acgccgcgaccccaggtggccaccccggtcacctgggacgaggtcgccgagggcgcggac
gacccgctcgggctggaccagttctcgatggcgcaggtgctcgagcgcgtcgagcagtac
ggggacctgttcgcctag
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