Nicotiana attenuata (coyote tobacco): 109242495
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Entry
109242495 CDS
T05870
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109242495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109242495
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109242495
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109242495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
109242495
NCBI-ProteinID:
XP_019264888
UniProt:
A0A314L3F4
LinkDB
All DBs
Position
Unknown
AA seq
2418 aa
AA seq
DB search
MIPFTSTVSTQIRFLLNSLNASNSDTVFHELRQYLAYGVEGSILLLQTCVDHLNVYGKDL
KNTQLDPVFASIFRCILDKPSFSTAFSESLKDTAISEEFLVNLSTALQLTISEKIGVGLA
LSDSENGDVRKCGTNYCMGQIAELCSANSSLDDVMPIQSVLLFLDQSEGLSKHVDSFMHM
LSLIQSKEEARFILTPLLSDELREANFLRNLDFLNDGGEDDFDALVAEMEKEMSIADIMK
ELGYGCTANVLQCKEMLSLFLPLTEVTVARILGMVVHTRSGIEDNQNVFSTFRAALGSST
ISDPSPLNSWSADVLIDAIKQLAPGLNWVTVMENLDHEGFYIPDGTAFSFLMSIYKHACQ
DPFPLGAICGSLWKNAEGQLSLLKYAVSVPPEVFTFAHCGRQLAYVDAVNDHKIQIGHAN
HAWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTAYNLLQHEVSAA
VFPVMLKNTGANGMILHLWHVNPSILLRGLVDTLNVDLENTYKVLDTCQEQKILSSVLDM
IPYAFGIRLAALASRKELVDLEKWLSNNLSTFKDIFFEECLKFLREVHLAAQDVASNRFD
PPNALWTICSETSTTFLKVLKSHSGLVSSRHLSEELDKLHIAYMDANSRLKSVGGADSCT
SDGSDDIEAEANIYFHQMFSGQLTNDATVQMLARFKESTEKREQAIFECMIANLFEEYKF
FSKYPERQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGIMALEQF
VDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISLAHSESEVAHSPAADQFHGPI
TSSTMNAEGSTFPVVGQGSLQQSMQGSSSNQLPQRQQSSLDERKPSAVLSSYLKPALSSA
VQPATVPSSDTASIQKPQGSVSASAVLTSSPGFLRPSRAITSARFGSALNIETLVAAAER
RETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTGIVEEQYYPWFAQYMVMKRASIEP
NFHDLYLKFLDKVTSKALFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKIT
IGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGL
LAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRVREVEGNPDFSNKDVGSSQ
PPIVGDVKSGIISSLNQVELPLEVPSPSHPSGPSRILTQYAAPLHIQSAPMTEDEKLAAL
GLSDQLPSAQGLLQGQSPFSVSQLPAPASNIEQQFVVNPKLHALGLQLHFQSVLPIAMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRICNAAHLMVASLSGSLAHVTCKE
PLRGSISGQLRTLLQGLGIANELLEQAVQLVTNDNLDLGCAMIEQAATDKAIQTIDGEIA
QQLAIRRKHREGVGPTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQN
QSSQSPNAVPAGPSTSSGSGGVSRAYMAGSGQMNPNVYSSGIVNAGISAVPQPLETSDEI
DTSSQLNSASSPHLGMGDSAASNNFETEAIAEPFTSVSAPELHPLEPSNIAKESGASLQP
SNATAASERVGNSISEPLLTTGDALDKYQIISEKLESLVSEEAKEAEIQALIAEVPAVIL
KCISRDEAALAVAQKAFKGLYENASNSAHVGAHLAILASIRDVSKLFVKELTSWVIYSEE
ERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAISLIQTLVISDSRVISE
LQNLVEVLAKIAARPGSPESLQQLVEIAKNPAAANAAALSSVTFGKEDSNKQSRDKKIAG
PATGTREDYGVSESVEPDPAGFREQVSMLFAEWYRICEIPGANDATHAHYILQLHQSGLL
KGDETSDRFFRRLTELSVSHCLSSEVMSSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVKFIQKDAEEKKLTFNPRPYFRLFINWLLDLCSLDPVFDGANF
QVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQIKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDESVVSGGIPDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcacctccactgtttctacacagattcggtttctgctcaatagcttgaac
gcttccaactccgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcagacgtgcgttgatcatctgaatgtttatgggaaagatttg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
agtttcagcaccgctttttctgaatccctaaaggatactgcaatcagtgaggagtttttg
gtgaatctctctactgctttacagttgacaatatctgaaaaaattggtgttggccttgca
ttgtcagactcggaaaatggtgatgtcaggaaatgtggaaccaactattgcatgggtcag
attgcagaattatgttccgccaattcttctttagatgatgtcatgccaattcagagtgtt
cttttgtttctggatcaatctgaaggcctctctaagcatgtagactcgtttatgcatatg
ctatcgctcatccagtcaaaagaagaagcccggttcattttaactcctttgctttctgat
gaacttcgtgaagctaattttttgaggaacttagatttcttaaatgatggtggtgaagat
gattttgatgctcttgtggcagaaatggagaaggaaatgagcatagcggacataatgaag
gaattgggttatggatgcactgctaatgtcttgcaatgcaaagaaatgttatccttattt
ttgccgttgactgaagtgactgttgctaggatacttggtatggttgtacatacccgctct
ggcatcgaggataaccagaatgtgttctcaacgttccgtgctgctcttggtagcagcact
atatctgatccatctccattgaattcttggagtgctgacgtccttattgatgcaataaag
caacttgctcctggacttaactgggtaactgtaatggaaaacctagatcacgagggtttc
tatattcccgatggaacagccttttcctttttgatgtccatttacaaacatgcctgtcag
gatccttttcctcttggagctatttgcggttctctctggaagaatgctgagggtcagctt
tccttacttaagtatgctgtctcggtgcctcctgaagtatttaccttcgcgcattgtggg
aggcaactggcttatgttgatgcggtgaatgaccataaaatccaaattggacatgcaaat
cacgcgtggttgtgtcttgaccttctcgaagttctttgccagctggctgagagaggttat
gcaagttctgtgcgatccattctggagcaccctctgaagcactgtccagaagtcttgctt
cttgggatggcccatatcaatactgcgtataatctcctccagcatgaagtttccgccgct
gttttccctgttatgctaaaaaatactggtgctaatggtatgattcttcatttgtggcat
gttaatcctagcatcttgttgcggggtcttgttgatacattgaatgttgacctggagaac
acctacaaagtcctggatacatgtcaagagcaaaagattctatcatcagtactggatatg
attccttatgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcgtggat
ttggagaaatggttgagcaataacttaagcacatttaaagatatcttctttgaggaatgc
cttaagttcttgagggaggtacatctcgctgctcaagatgttgcttccaaccgctttgat
cctcccaatgctctttggactatttgttcagaaacttctacaacctttttaaaggtactt
aagtctcattctggcctagtttcttcacgccacttatcggaggagctggacaagttgcac
atagcatacatggatgctaattcaaggcttaagagtgttggtggtgctgattcatgcact
tctgatggttctgatgatattgaagcggaagcaaacatatacttccatcaaatgttctct
ggtcagctgactaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcgactgaa
aaaagggagcaagcaattttcgagtgcatgattgctaatctgtttgaagaatacaaattt
ttctccaagtacccagaaaggcagctcaaaatagctgctgttctatttggatcacttatt
aagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggatgcg
ttgcgcaagcctgctgattcaaagatgtttgtttttgggattatggcacttgaacagttt
gttgaccgtctgattgaatggccacaatactgcaaccatatcttgcaaatttctcatctc
cgggcaactcattcggagcttgttgcgttcattgaacgggcgcttgctaggatatcactg
gcacattctgaatcagaggtagcccacagtcccgctgctgatcaattccatggtcctata
acatcttccacaatgaatgccgagggttcaacatttcccgtggttggacagggtagcttg
cagcaaagtatgcagggatcctcttcaaaccagcttcctcagagacagcaaagttcctta
gatgagagaaaaccctctgctgttctctccagctacttgaagccggctttatcatctgcg
gtgcaacctgccactgttccttcaagtgatacggctagcattcagaagccacagggttca
gtcagtgcttcagcagtactcacttcttctcctggttttcttcgtccatctcgggccatt
acctctgcaagatttggttctgcattgaatattgaaacacttgttgctgctgcagagaga
agagaaacacccatagaggctcctgcatctgaaattcaggataagatatcatttattatc
aataacttatctgcggcaaatattgaagctaaagcaaaagagtttactggaattgtggag
gagcagtactacccgtggtttgcgcagtatatggtgatgaaaagagcaagcattgagcca
aattttcatgatttgtacctgaagttcctagataaagtaacttcaaaagctttgttcaag
gagattgtccaagcaacctacgagaattgcaaggttcttttagggtcagaattgataaaa
tcaagttcagaagagcgctctttgctgaaaaaccttggaagctggctagggaaaattaca
attggaaggaatcaagtcttgagggcgcgggagattgatccaaagtctttgattatagag
gcgtatgaaaaaggtttgatgattgcagttattccttttacttcgaaggttctggaacca
tgccaaagcagtctagcataccaaccgcctaacccttggaccatgggtattcttgggttg
cttgctgagatttacgcaatgccaaatcttaaaatgaatctcaagtttgacattgaggtc
ctgttcaaaaatcttggtgtggatctaaaagaggtagttccaacttctcttctcaaggac
agggtgagagaagtggaaggaaatcctgacttctcaaacaaggatgttggatcttcccaa
ccacctatcgtgggtgatgtcaaatctggcattatatcttcactaaaccaggttgaacta
ccacttgaggttcccagtccttctcatcctagtggcccttcgcgtattttaactcagtat
gctgctcctcttcatattcaatctgctccaatgacggaggatgagaagctagcagcgctt
gggctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcacctttttct
gttagtcagcttcctgcacctgcatctaatattgagcagcaatttgttgtcaatcctaag
cttcatgctctgggcttgcagttgcattttcagagtgtacttcccattgctatggataga
gctatcaaagagattgtgtccagcattgtgcagcgcagtgtttctatagcaactcagaca
acaaaggagcttgttttaaaggactatgccatggaatcggatgagacccgcatatgtaat
gctgcacacttgatggttgccagtttgtcaggaagtctcgctcatgtgacatgcaaggaa
cctttacgtggttcaatatcgggccagcttcgtactttacttcagggattgggtattgca
aatgagctccttgaacaagctgttcagcttgttactaatgacaatcttgatcttggctgt
gcaatgattgaacaagcagcaacagataaggctatacagactattgatggagaaatagct
caacagctagccattagaaggaagcacagagagggtgttggtccgacattttttgatgca
agcctttatacacaaggacatatgggtggtttaccagaagctcttcgccctaaacctggc
cgcttatcccattcacagcaacgagtttatgaggattttgtccgcttaccttggcaaaat
caatcaagccaaagcccaaacgctgttcctgctggtccttctacttcttccggcagcggt
ggtgtctccagggcgtatatggctggaagtggacaaatgaaccccaacgtttactcgtct
ggcattgtaaatgcaggaattagtgctgttccgcaaccattggaaacatcagatgagata
gatacttcatctcagcttaatagtgcatcttctccccatcttgggatgggtgatagtgcc
gcttctaacaattttgaaaccgaggctattgctgaaccattcacatcggtgtcagctcct
gaattgcatccactggaaccttcaaacattgcaaaggagtcgggagcttctttacagcca
tcgaatgcaacagctgcctctgaacgtgttggaaatagtatctcggaaccgttgctgaca
actggtgatgctttggataagtaccagattatttctgaaaagcttgaaagcctggtgagt
gaagaagctaaggaggcagaaattcaggcgcttattgctgaagttccagcagtcatcctc
aaatgtattagtagagatgaggctgccttggcagtcgcccaaaaggcttttaagggattg
tatgaaaatgcatcaaatagtgcacatgttggtgctcatcttgcaattctggcttcaatc
cgcgatgttagcaagcttttcgttaaggagctaactagctgggttatttactccgaagag
gagcggaagttcaacaaagacattacggttggtttgatacggagtgaactgctaaacctt
gctgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgctact
gaatttgctatttctctaattcaaacgctggtgataagtgattcgagagtcatatcggag
ctacaaaaccttgttgaagtgctggctaagattgcagcaaggccagggtctcctgagtct
ctacaacaactagtggagatcgctaagaaccctgctgctgctaatgctgctgcactgtct
agtgttacttttgggaaggaggatagcaacaaacaatctagagacaaaaagattgctggg
cctgctactggtaccagagaagattatggtgtttctgaatctgttgaaccagatcctgca
ggctttcgcgagcaggtctctatgctctttgctgaatggtaccgtatttgtgaaattccg
ggagcgaatgatgcaactcatgctcattatatcctgcaattgcaccagagtggcctatta
aaaggcgatgaaacttcagatcgttttttccgcagactcacggaactttccgtttcgcat
tgcctttcgtctgaggttatgagttccacccctcaatctcaccaagcacaacctctatcg
ttccttgcaattgatatctatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcagggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtcaaattc
atccagaaagacgctgaggaaaagaagctgacatttaatcctagaccatattttaggctt
ttcattaattggctattggatctctgttccctggaccctgtttttgatggtgcaaacttt
caggttttaacagctttggccaatgccttccatgctcttcagcccctcaaaattccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgccgaaacttcttgct
ggaaatgctcagaaggggtggccttattttcagcggttgttggtggacctcttccagttt
atggagccctttcttaggaatgctgagctaggagaaccggtccagtttttgtataaaggg
actctcagggttttgttggttctcctgcatgattttccagagtttctgtgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacaaatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
cttgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaagca
aaacagatcaagggtgatgtagatgaatatctgaagacaaggcaacagggatctccattt
ttgagtgaattgaagcagaagttgctgctctctccaagtgaagccgccaaggctgggacg
cgctacaatgtaccccttatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgcacagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctggatattttccagactttaataatggacttggacacggag
gggcgttacttgtttttgaatgcagtcgctaatcaattgcgatacccaaacaatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaatcaggagatgatccaa
gaacagataaccagagtcctattagaacgcctgattgtgaaccgacctcatccgtggggt
ctcctgatcacattcattgagcttataaagaatcctaggtacaacttttggagtcgacca
tttacaagatgtgctccagagatagagaaactgtttgagtctgtctcaagatcatgtggt
ggccctaaacctgtggatgagagcgtggtgtcaggtggaatacctgatatccattag
DBGET
integrated database retrieval system
