Nocardioides baekrokdamisoli: Back2_12370
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Entry
Back2_12370 CDS
T06654
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nbe
Nocardioides baekrokdamisoli
Pathway
nbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Back2_12370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbe03021
]
Back2_12370 (rpoB)
03400 DNA repair and recombination proteins [BR:
nbe03400
]
Back2_12370 (rpoB)
Enzymes [BR:
nbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Back2_12370 (rpoB)
Transcription machinery [BR:
nbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Back2_12370 (rpoB)
DNA repair and recombination proteins [BR:
nbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Back2_12370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
FH2
Motif
Other DBs
NCBI-ProteinID:
BBH16950
UniProt:
A0A3G9IDA4
LinkDB
All DBs
Position
complement(1265746..1269195)
Genome browser
AA seq
1149 aa
AA seq
DB search
MASTPRRISFAKIAEPLELPKLLSLQTDSFDWLIGNEVHQGRIVARRAAGEDVSDKSGLT
EIFEEISPIEDFSETMSLSFENPVFYDPKYTVDECKEKDFTYSAPLYVSAEFTNNETGEI
KGQTVFMGDFPLMTDKGTFVINGTERVVVSQLVRSPGVYFERTADKLSDKDIFTAKLIPS
RGAWLEFEIDKRDLVGVRLDRKRKQNVTVLLKALGMTNEEIREEFGQFESILLTLEKDHT
VTQDDALLDIYRKLRPGEPPTREAAQTLLNNYYFNPKRYDLAKVGRYKINKKLGLVEAFD
QQTLTIEDIKNAIKYICALHADEKQIAAPAGPLDVQADDIDHFGNRRMRTVGELIQNQLR
TGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGTSQLSQFMDQTNPIAGLT
HKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRINPFG
FVETPYRKVENGKITTQVDYLTADDEARFVIAQANAAVDKNGKFATERVLVRLADGEVAE
VPAGDVDYIDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPLVKSDSPIVGTGV
EFRAAVDAGDVVVAEKAGVVKEVSADLVETMNDDGTYTTYRLAKFKRSNQGTCINQRPLV
DVGDRLEAGSPIADGPCTDNAEMALGANLLVAFMPWHGHNYEDAIILSQRLVQEDYLTSI
HIEEHEVDARDTKLGPEEITRDIPNISEEGLADLDERGIIRIGAEVRTGDILVGKVTPKG
ETELTPEERLLRAIFGEKAREVRDTSMKVPHGEEGTVIGVRVFDREEGDELPPGVNQLVR
VYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDMPFMEDGTPVDVILNPLGVPRRMNIGQ
ILELHLGWLAKQGWDLNLTGDAKDSDWAKRLIAIGADKAAPGTKVATPVFDGAREDEITG
LLKATLPNRDGIRLVGEDGKARLFDGRSGEPFPEPVAVGYKYILKLHHLVDDKIHARSTG
PYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVPGRVKVYEAIV
KGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGTAIELKDAEEDVFRAAEELGIDLSR
REPSSVEEV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggcctccacgcctcgccgcatctcgttcgcgaagatcgccgaacccctcgagctcccg
aagctcctctccctgcagaccgacagcttcgactggctgattggcaacgaggtccaccag
ggccgcatcgttgcccgtcgcgccgcgggcgaggacgtctctgacaagtccggtctgacg
gagatcttcgaggagatctctccgatcgaggacttctccgagacgatgtcgctctcgttc
gagaacccggtcttctatgaccccaagtacacggttgacgagtgcaaggagaaggacttc
acctactccgctccgctctacgtgtcggccgagttcaccaacaacgagactggtgagatc
aagggccagaccgtcttcatgggcgacttcccgctcatgaccgacaagggcaccttcgtg
atcaacggcaccgagcgtgtcgtcgtctcgcagctcgtccggtcgccgggcgtctacttc
gagcgcaccgcggacaagctgtccgacaaggacatcttcaccgccaagctcatcccgagt
cgtggagcgtggctcgagttcgagatcgacaagcgcgacctggtcggcgtacgtctggac
cgcaagcgcaagcagaacgtgaccgtcctgctcaaggccctcggcatgaccaacgaggag
atccgcgaggagttcggccagttcgagtcgatcctgctcaccctggagaaggaccacacg
gtcacccaggacgacgccctgctcgacatctaccgcaagctccgtccgggcgaaccgccg
acgcgtgaggctgcgcagacgctgctcaacaactactacttcaacccgaagcggtacgac
ctggcgaaggttggtcgttacaagatcaacaagaagctcggtctcgttgaggccttcgac
cagcagacgctgaccatcgaggacatcaagaacgcgatcaagtacatctgcgcgctccac
gccgacgagaagcagatcgcggctccggccggtccgctcgacgtccaggccgacgacatc
gaccacttcggcaaccgccgcatgcgtacggtcggcgagctcatccagaaccagctccgc
accggtctggctcgtatggagcgtgtcgttcgcgagcggatgacgactcaggacgtcgag
gcgatcacgccgcagtcgctgatcaacatccgcccggtcgtggccgcgctgaaggagttc
ttcgggacctcacagctgtcgcagttcatggaccagaccaacccgatcgccggactgacg
cacaagcgtcgcctctccgcgctcggcccgggtggtctctcgcgtgaccgcgccggcatg
gaagtccgagacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccctgaa
ggtccgaacatcggtctgatcggttcgttggcttcgtacggccggatcaacccgttcggt
ttcgtcgagaccccgtaccgcaaggtcgagaacggcaagatcaccacgcaggtcgactac
ctgaccgccgacgacgaggcccgcttcgtcatcgcccaggccaacgctgcggtggacaag
aacggcaagttcgccaccgagcgcgttctggtccgtctcgccgacggcgaggttgcggag
gttccggccggagacgtcgactacatcgacgtgtccccgcgccagatggtctcggtcgcg
accgcgctgattccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaac
atgcagcgtcaggcagtcccgctcgtcaagagcgacagcccgatcgtcggcaccggtgtg
gagttccgcgccgctgttgacgccggcgacgtcgttgttgccgagaaggccggtgtggtc
aaggaggtctccgccgacctcgtcgagacgatgaatgacgacggtacgtacaccacctac
cgcctcgcgaagttcaagcgctcgaaccagggcacctgcatcaaccagcgtccgctggtc
gacgtcggcgaccgcctcgaggccggctcgccgatcgctgacggcccgtgcaccgacaac
gccgagatggcgctgggcgcgaacctcctggtcgcgttcatgccgtggcacggtcacaac
tacgaggacgcgatcatcctgagccagcgtctggttcaggaggactacctcacctcgatc
cacatcgaggagcacgaggtcgacgcacgcgacaccaagctgggtccggaggagatcacc
cgggacatcccgaacatctccgaggaggggctggctgacctcgacgagcgcggcatcatc
cgcatcggcgccgaggttcgtaccggcgacatcctggtcggcaaggtcaccccgaagggt
gagaccgagctgaccccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgc
gaggttcgcgacacctcgatgaaggtcccgcacggcgaggagggcaccgtcatcggtgtc
cgcgtcttcgaccgcgaagagggcgacgagctgcccccgggcgtgaaccagctggtccgc
gtctacgttgcgcagaagcgcaagatctcggtgggcgacaagctcgcaggtcgacacggc
aacaagggcgtcatcgccaagatcctgccgatcgaggacatgccgttcatggaggacggc
accccggtcgacgtgatcctgaacccgctcggtgttccgcgtcgtatgaacatcggtcag
atcctcgagctccacctcggttggctcgccaagcagggttgggacctcaacctgaccggc
gacgccaaggacagcgactgggccaagcgcctgatcgccatcggcgccgacaaggctgct
ccgggcacgaaggtcgccacgccggtcttcgatggtgcccgcgaggacgagatcaccggt
ctgctcaaggcgaccctgccgaaccgcgacggcatccgcctcgtcggtgaggacggcaag
gcccgcctgttcgacggtcgctccggcgagccgttcccggagccggttgctgtcggttac
aagtacatcctcaagctgcaccacctcgtggacgacaagatccacgcgcgcagcacgggc
ccgtactcgatgatcacgcagcagccgctcggtggtaaggcccagttcggtggccagcgc
ttcggtgagatggaggtctgggccatggaggcgtacggcgccgcctacgccctgcaggag
ctcctgaccatcaagtccgacgacgtccctggtcgcgtgaaggtgtacgaggccatcgtc
aagggcgagaacatccccgactcgggtatcccggagtcgttcaaggttctcgtcaaggag
atgcagtcgctgtgtctcaacgtcgaggtcctcagccaggacggtacggcgatcgagctc
aaggacgcagaggaagacgtcttccgtgcggccgaggagctgggtatcgacctgtcccgt
cgtgagccgtcgtccgtcgaagaagtctga
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