Nocardia brasiliensis: O3I_016110
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Entry
O3I_016110 CDS
T02270
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O3I_016110 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbr03021
]
O3I_016110 (rpoB)
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_016110 (rpoB)
Enzymes [BR:
nbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O3I_016110 (rpoB)
Transcription machinery [BR:
nbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O3I_016110 (rpoB)
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O3I_016110 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
HTH_23
DUF5560
Robl_LC7
Motif
Other DBs
NCBI-ProteinID:
AFU01183
UniProt:
K0ENI6
LinkDB
All DBs
Position
complement(3596307..3599822)
Genome browser
AA seq
1171 aa
AA seq
DB search
MQFVSSEVPKGRTVPVSPQTDADHAVAVAAIPGAPHRLSFARVQEPIDVPKLLDLQTDSF
GWLIGTPDWRARALARGETDPVGGLEEILAELSPVEDFAGSMSLSFSDPRFEEVKASIDE
CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLTR
SPGVYFDHSVDKTTDKNLYSVRVIPSRGAWLEFDIDKRDTVGVRIDRKRRQPVTVLLKAL
GWSPEQIAERFGFSEVMLSTLAKDHTSGADEALLDIHRKLRPGEPPTKESAQNLLENLLF
KEKRYDLARVGRYKTNKKLGITDSTTTTLTETDLIATIEYLAHLHAGDKTMTGPGGAEIP
VELDDIDHFGNRRVRTVGELIQNQIRIGLSRMERVVRERMTTQDVEAITPQTLINIRPVS
ASIKEFFGTSQLSQFMMQDNPLAGLTHKRRLSALGPGGLTRERASLEVRDIHFSHYGRMC
PIETPEGPSIGLIGYLSVYARVNPFGFIETPYRRVAGGQVTDEIVYLTADEEERYVRAQA
NSPVDADRRLSESKVLARRFGEEVEYVAPSAVDFMDVSPRQMVSVASAMIPFLEHDDANR
ALMGANMQRQAVPLIRSEAPIVGTGMELRASIDAGDLVLNDKAGVVEEVSADYITVMADD
GTRRSYRLRKFARSNQGNCYNQRPIVDEGQRVETGQVLADGPCTENGEMALGKNLLVAIM
PWEGHNYEDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADL
DERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGES
GKVIGIRVFSREDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPTEDM
PFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIGKAGWEIQGAPEWAAALPEALRSAP
PNSNIATPVFDGAQDAELAGLLGSTLPNRDGDVLVGADGKATLFDGRSGEPFPYPVAVGY
MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE
LLTIKSDDIVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSAEGLAIEM
RDGDDEDLERAAANLGINLSRNEATVDDLPS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattcgtcagcagcgaagtcccgaaaggacgcaccgtgcccgtatcgccccagacc
gacgccgatcacgccgtggccgttgccgctatccccggagcaccgcaccggctgtctttc
gccagagtgcaagaacccatcgatgtgccgaagctgctcgacctgcaaaccgattcgttc
ggctggctgatcggcacaccggactggcgcgccagggcgctcgcccgcggcgaaaccgac
ccggtcggtggactcgaggaaatcctcgcggaactgtccccggtcgaggatttcgccggc
tcgatgtcgctgtctttctccgatcctcggttcgaagaggtcaaggcctcgatcgacgag
tgcaaagacaaggacatgacctacgcggcgccgctgttcgtcaccgcggagttcatcaac
aacaataccggcgagatcaagagccagacggtcttcatgggtgatttcccgatgatgacc
gacaagggcacgttcatcatcaacggcaccgagcgcgtcgtcgtctcacagctgacccgc
tcgcccggagtttatttcgatcactcggtggacaagaccaccgataagaatctgtacagc
gtgcgcgtcatcccgtcgcgtggcgcgtggctggagttcgacatcgacaagcgcgacacc
gtcggcgtccgcatcgaccgcaagcgccgccagccggtgacggtactgctcaaggcgctc
ggctggagtccggaacagatcgccgagcggttcggcttctccgaggtcatgctgtcgacc
ctggcgaaagaccacacgagcggcgccgacgaggcgctgctggacatccatcgcaagctg
cgtccaggtgagccgccgaccaaggagtccgcgcagaacctgctggagaatctgctcttc
aaggagaagcgctacgacctcgcgcgcgtgggtcgctacaagaccaacaagaaactcggc
atcaccgacagcaccacgaccacgctcaccgagacagacctgatcgcgaccatcgagtac
ctggcacacctgcacgccggcgacaagacgatgacggggcccggcggtgccgagatcccg
gtcgaactcgacgatatcgatcacttcggcaaccgtcgcgtccgtaccgtcggcgagctg
atccagaaccagatccgcatcggcctgtcccggatggagcgggtggtccgcgagcggatg
accacccaggacgtcgaggcgatcacgccgcagaccctgatcaacatccgcccggtgagc
gcgtcgatcaaggagttcttcggcacctcgcagctctcgcagttcatgatgcaggacaac
ccgctcgccgggctcacgcacaagcgccgcctgtccgccctcggccccggcggcctgacc
agggaacgcgccagcctcgaggtgcgcgacatccacttcagccactacggccggatgtgc
ccgatcgaaacgccggaaggcccgagtatcggtctgatcggctacctttcggtgtacgcg
cgggtcaatccgttcggcttcatcgagacgccgtaccgccgggtggccggcgggcaggtc
accgacgagatcgtctacctcaccgccgacgaagaagagcgctacgtgcgcgcgcaggcc
aactcgccggtcgacgccgaccggcgcctgtccgaaagcaaggtgctggcacggcgtttc
ggcgaggaggtggaatacgtcgccccgtcggcggtcgacttcatggatgtctcaccgcgc
cagatggtttcggtcgcctcggcgatgattcccttcctggaacacgacgacgccaaccgc
gccctgatgggtgcgaacatgcagcgtcaggccgtgccgctgatccgttccgaggccccg
atcgtcggcaccggcatggaattgcgcgcatccatcgacgccggcgacctggtcctcaat
gacaaagccggtgtggtggaagaggtttcggccgactacatcaccgtcatggccgatgac
ggcacccggcgcagctaccggttacgcaagttcgcgcgctcgaatcaaggcaactgctac
aaccagcggccgatcgtggacgaggggcagcgggtcgagaccggtcaggtgctcgccgat
ggtccgtgcaccgagaacggtgagatggcgctgggcaagaacctgctcgtggcgatcatg
ccgtgggagggccacaactacgaggacgcgatcatcctgtcgcagcgcctcgtggaagag
gacgtgctgacctcgatccatatcgaagagcacgagatcgatgcccgcgacaccaaactc
ggtgccgaggagatcacccgcgatatccccaacgtctccgacgaggtcctggccgacctc
gacgagcgcggcatcgtgcgcatcggcgcggaggtccgtgacggtgacatcctggtcggc
aaggtcaccccgaagggcgagaccgagctgaccccggaagagcggttgctgcgcgcgatc
ttcggggagaaggcccgtgaggtgcgtgacacctcgctcaaggtgccccacggtgagtcc
ggcaaggtcatcggtatccgggtgttctcccgcgaggacgacgacgacctgcctcccggt
gtgaacgagctggtgcgcgtctacgtcgcgcagaagcgcaagatccaggacggtgacaag
ctcgccggtcgccacggcaacaagggtgtcatcggcaagatcctgcccaccgaggacatg
cccttcctgcccgacggcaccccggtcgacatcatcctcaacacccacggcgtgccgcgt
cgtatgaacatcggccagatcctggaaacccacctcgggtggatcggcaaggccggctgg
gagattcagggtgcaccggagtgggccgcggcgctgcccgaagcactgcggtccgcgccg
ccgaacagcaatatcgcgacgccggtcttcgacggcgcccaggatgccgaacttgccggg
ctgctcgggtcgacgctgcccaatcgggacggcgacgtgctggtgggcgcggacgggaaa
gcgacgctgttcgacgggcgttcgggtgaaccgttcccgtacccggtggcggtcggctac
atgtacatcctgaagctgcaccacctggtcgacgacaagatccacgcccgttcgaccggt
ccgtactcgatgatcacccagcagccgctcggcggtaaggcccagttcggtggccagcgc
ttcggtgaaatggagtgctgggcgatgcaggcctacggcgcggcttacacgctgcaggaa
ctgctcaccatcaagtccgacgacatcgtgggtcgcgtgaaggtctacgaggcgatcgtc
aagggcgagaacattccggagccgggcattccggagtcgttcaaggtgctcctcaaggaa
ctccagtcgctgtgcctcaacgtcgaagtcctctccgcggaaggcctcgcgatcgagatg
cgtgacggcgacgacgaggacctggagcgcgcggccgcgaacctgggcatcaacctgtcc
aggaacgaggccacggtggacgacctgcccagctga
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