Nocardia brasiliensis: O3I_038415
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Entry
O3I_038415 CDS
T02270
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O3I_038415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbr03021
]
O3I_038415
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_038415
Enzymes [BR:
nbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O3I_038415
Transcription machinery [BR:
nbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O3I_038415
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O3I_038415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFU05630
UniProt:
K0F8C0
LinkDB
All DBs
Position
complement(8631292..8635245)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELIDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTRLEEGGKGEYK
PAAKDSAEFGVYSSPAEAQMAVDRGELTVRSLIKVRLTEQRPPKDIETALFPQGWQRGDA
WIAETTLGRVLFNELLPADYAFINEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKTEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGRALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCATERGIVVPI
AEKQPDGTIIRDAHVETSAYARTLASDAVDANGNVVVGKGADLGDPAIEALLDAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRIMGPRQVQIHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFEASNRRVVAEGNEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGQTTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgccgacgacatt
cgccagtggtccttcggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgggccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtcatcgtcggggtcgac
gaggagctgcgccacaacgagctcagcaccctcgaagccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgtgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggccccgaagcagctcatcgtcgacgaggtgctc
taccgcgagctgatcgaccgctacggcgagtacttcaccggcgccatgggtgcggagtcc
atccagaagctgatggagaacttcgacatcgacgccgaggccgagaacctgcgggagacc
atccgcagcggcaagggccagaagaagctgcgtgcgctcaagcggctcaaggtcgtcgcg
gcgttccagaccaacggcaactcgccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggaccgggtaaccgcccgctgaag
tcgctgagcgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgaaggtaag
gcgatccagctgcacccgctcgtctgtgaagcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcctcgggtcgcccgctggccatgccgcgtctggac
atggtgaccggcctgttctacctgacccgcctcgaagagggtggcaagggcgaatacaag
ccggccgcaaaggattccgccgagttcggcgtgtactcctcgcccgccgaggcgcagatg
gcggtggaccgcggtgagctcaccgtgcgttcgctgatcaaggtgcggctcaccgagcag
cgcccgccgaaggacatcgagacggcgctgttcccgcagggctggcagcgcggtgacgcg
tggatcgcggagaccaccctcggtcgcgtgctcttcaacgagctgctcccggcggactac
gcgttcatcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctgaaggacgcgggcttc
tactgggccacccgttccggcgtgacggtctccatgtccgacgtgctcgtgccgccggag
aagaccgagatcatggagcgctacgaggcgcagtccgaccagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtgaagatctggcaggaagcg
accgaagaagtcggtcgcgcgctgcgggcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggcgccaccggtaacttcacccagactcgtaccctcgccggtatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggcgcgcgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtgatcgtgcgcgagcacgactgcgccaccgagcgcggcatcgtggtgccgatc
gcggagaagcagccggacggcaccatcatccgcgacgcgcacgtcgagaccagtgcctac
gcccggacgctcgcgtccgacgcggtcgacgccaacggcaacgtcgtcgtcggaaagggc
gccgacctcggcgacccggccatcgaggcgctgctcgacgcgggtatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggcgtgtgtgcgacctgctacggccgc
tccatggcgaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggcgatgacatcaccggcggtctgccccgcgtgcaggagctcttcgaggctcgtgtgccg
aagggcaaggcgcccatcgccgaggtctccggccgggtgcggctcgaggacgacgatcgc
ttctacaagatcaccatcatccccgatgacggtggcgaagaggttgtctacgacaagctc
tcgaagcggcagcgcctgcgtgtcttcaagcacgacgacggcaccgagcgtctgctctcc
gacggcgaccacgtcgaggtcggccagcagctgctggaaggcgcggcggatccgcacgag
gtgctgcgcatcatgggtccccgtcaggtgcagatccacctggtccacgaggtccaggag
gtctaccgctcgcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgattcgggtgccacggagttcctgcccggttcgctc
accgagcgttccgagttcgaggcctccaaccgtcgcgtcgtcgccgagggcaacgagccc
gcggccggccggccggtgctgatgggtatcacgaaggcgtcgctcgcgaccgattcgtgg
ctgtcggcggcgtccttccaggagaccactcgagtgctgacggacgcggccatcaactgc
cgctccgacaagctcatcggcctcaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaagaagcccgtgcc
gccgcgtacgcggtgccgtcctacgacgacacctactacagcccggacagcttcggccaa
accaccggcgccgcagtcccgctcgacgactacggtttcagcgactaccgctag
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integrated database retrieval system
