KEGG   Sciurus carolinensis (gray squirrel): 124965626
Entry
124965626         CDS       T08117                                 
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03013  Nucleocytoplasmic transport
ncar04150  mTOR signaling pathway
ncar05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124965626
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    124965626
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    124965626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124965626
   04131 Membrane trafficking [BR:ncar04131]
    124965626
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124965626
Membrane trafficking [BR:ncar04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    124965626
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 124965626
NCBI-ProteinID: XP_047382639
LinkDB
Position
15:3541577..3568422
AA seq 437 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAI
ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVSGSSQQGNSNPSLGSTTPSLQNSLNGSSAGRLPQ
KMADYKDDFMKYFFPPLDSPRAGSRWSSYAQLLPPPPPPPPLLEPSCDADTANLQYPHPR
RRSLSRPLNPLPENEGV
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggaccacaaggatctcatccacgatgtctctttc
gactttcacgggcggcggatggcgacctgctccagcgaccagagcgtcaaggtctgggac
aaaagtgaaagtggagattggcattgtactgctagctggaagacacacagtggatccgtg
tggcgtgtgacgtgggcccatcctgaatttggacaggttttggcttcctgttcttttgat
cgaacagctgctgtgtgggaagaaatagtaggagaatccaatgacaaactgcgaggacag
agtcattgggtgaagaggacaactctcgtggatagcagaacatccgtgacggacgtgaag
tttgctcccaaacacatgggtcttatgttagcaacctgctcggcagatggcgtagtgaga
atatacgaggcaccagatgttatgaatctcagccagtggtctctgcagcacgaaatctct
tgtaagctaagctgtagttgcatctcttggaacccttcaagctctcgtgcgcattccccc
atgatagccgtaggcagcgacgacagcagtccaaatgcaatggccaaggttcagattttt
gagtacaacgaaaacaccaggaaatatgcaaaagctgaaactcttatgacagtcactgat
cctgtacatgatattgcatttgctccaaacttgggaagatctttccatattctagcaata
gcaaccaaagatgtcagaatttttacattaaagcctgtgaggaaagaacttacttcctct
ggtgggccaacaaaatttgaaatccatatagtggctcagtttgataatcataattctcag
gtctggcgagtgagttggaacattactggaacagtgttggcatcttcgggagatgatggc
tgtgtaagattatggaaagctaattatatggacaactggaagtgcactggcattttgaaa
ggtaatgggagcccagtcagtgggagttctcagcaaggaaactcaaacccttccctaggt
tcaaccactccaagtcttcagaactcattaaatggatcttctgccggcaggttaccacag
aagatggcagattataaagatgatttcatgaagtatttctttccccctctggattcccca
cgggctggatcgagatggtccagttatgcccagctccttcctcctcctcctcctcctcct
cctctgctagagccctcttgcgatgctgacactgccaacctccagtatcctcaccctcgc
agacgatctctctctcggcctcttaatcccttacctgagaatgaaggggtttaa

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