Sciurus carolinensis (gray squirrel): 124967522
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Entry
124967522 CDS
T08117
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124967522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124967522
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124967522
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124967522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124967522
NCBI-ProteinID:
XP_047385860
LinkDB
All DBs
Position
16:25765700..25853600
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaattaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcaacattgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaggaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcctac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttctcaagacactgcgcagagattttcctcaagaacgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattccggaggggttgctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttaggaatgatggctcgaact
cattcaggattaacagacggtattccattacagagtatctctgcacctggcagtgggatc
tggagtgatgggaaagataaaagtgatggagcacaggcacacacatggaatgtggaagtc
ttgattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtattcccagttgatttcatatatagaccttggaag
catgcagaaggccagctatctttcattcagcattccctgataaatccagagattttctgt
ttcgctgactatccttgtcatactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgcaacatggaagagcttggatttgattgaatctctattgaggctt
gcggaggttggccagtatgaacaagtcaaacaactcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacttcctggcataccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccatcctaactctgccattatt
ctgcactatgcgtggcatgggcagggacagtctccctcaattcgccaactcattatgcat
gcaatggcagaatggtacatgagaggggagcaatatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtccatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcactagcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgggaacatggggagccttttatccaagcatgcatgactttttta
aaaagacggtgcccttctatcttgggtggacttgccccagagaaagaccaacccaaaagt
gctcaacttcctcctgaaactctggcaacaatgttggcctgtctacaggcttgtgcgggg
agtgtttctcaggaattatcagagaccatcctcaccatggtagccaattgcagtaatgtt
atgaataaggcccgacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agtagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacctctttcaacccca
aatcagacaacagcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgacccttttgtgcagagaaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catcccaccatgtccgttgatgaggtattagaaatgctacaaagatttaaagactctacc
ataaaaagggaacgagaagtatttaactgtatgttaaggaacttgtttgaagaatatcgg
tttttcccccagtatcctgataaagagttacatataacagcctgcctgtttggtggcata
attgagaaaggactggtcacttacatggcactgggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggatctaaaatgtattattttgggattgctgcactagataga
tttaaaaataggttgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcagtttccacatcatttacaagagtatattgaatatggacagcagtctagagac
cctcctgtgaaaatgcagggctccatcacaacccctggaagtatcgctttggcccaggct
caggcccaggctcaggttccagcgaaagctcctcttgctggtcaggttaacactatggta
accacctcaacaactaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agttttaagaaagatgtaccaccttctatcaatactacaaatatagatacattgcttgtg
gccacagaccaaaccgagagaattgtggagcccccagaaaatatccaagagaaaattgct
tttatcttcaataatctctcacagtcaaatatgacacagaaggttgaagaattaaaagaa
actgtgaaggaagaatttatgccctgggtttcacagtatctagttatgaagagagtcagt
attgaaccaaacttccacagcctttattcaaacttccttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgagacctacagaaacatcaaagtgctcctgacctctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggctggga
atgatcacattagctaaaaataaacccatcttacatactgacttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacaacaggagttgctctatgtagtaccctttgttgct
aaagttctagagtccagcattcgtagtgtggtttttaggccaccaaacccctggacaatg
gctattatgaatgtattagctgagctacatcaggaacatgacttgaagttaaacttgaag
tttgagattgaggtgctctgcaagaaccttgcattagacatcaatgaactaaaacctgga
agcctcctaaaggacaaagatcgcctaaagaacttagatgaacagctctctgctccaaag
aaagatgtcaaacaaccagaagaactccctcccattacaaccacaaccacttctacaaca
cctgctaccagcactacctgtacagccacagttccaccacagccgcagtacagctaccac
gacatcaatgtctattccctcgcaggcctggcaccacacattactcttaaccctacaatt
ccattatttcaggctcatccacagttgaagcagtgtgtgcgtcaagcaattgaacgggct
gtccaggaactggtccatccagtggtagatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaatttgacagctggaatggctatgattacttgcagggagccc
ttgctgatgagtatatctacaaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagagaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagttgaaaaagcaggccctgagatggac
aagagattagcaactgaatttgaattgagaaaacatgctaggcaagaaggtcgcagatac
tgtgatcctgtggtattaacctatcaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagttggctgtttatgaagagtttgcacgcaatgtgcca
ggcttcttgcctacaaatgacctcagtcagcccacaggatttttagctcagcctatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagaactggag
cagcacctacatgccattccaccaactctggccatgaaccctcaagctcaggctcttcga
agtcttttggaggttgtagtattatctcgaaactcccgggatgccatagctgctcttgga
ttactccagaaggctgtagagggcttattagatgccacaagtggtgctgatgctgacctt
ctgctgcgctatagggagtgccacctcttggtactaaaagctctgcaggatggtagggca
tatggatctccgtggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tacaaatacaatgtggaagctgttgagttgctaattcgcaatcatttggttaacatgcag
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaatccttctggtggatgaaaggagtgtttcccatgttact
gaggcagatctgttccataccattgaaaccctcatgaggatcaatgctcattccagaggc
aacgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagccatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctaagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagctgctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatactgaagactgatgat
ctcataacaaggttctttcgtctatgcactgaaatgtgtgttgaaatcagttaccgtgca
caagctgagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgctat
cacaacctggatgcttttgtccgactcattgcactgctagtgaagcactcaggggaggcc
accaatactgtcacaaagattaatctgctaaacaaggtccttggaatagtagtgggagtt
ctcctacaggatcatgatgttcggcaaagtgaatttcagcagcttccctaccatcgaatt
tttatcatgctgctcttagaactcaatgcacctgaacatgtgttggaaaccattaatttc
cagacacttacagctttctgcaatacattccacatcttgaggcctaccaaagctcctggc
tttgtatatgcctggcttgaactgatctcccatcggatatttattgcaagaatgttggca
catacgccacagcagaagggatggcccatgtatgcacagctacttattgatttattcaaa
tatttagcgcctttccttagaaatgtggaactcaccaaacccatgcaaatcctctacaag
ggtactctaagagtgctactggttcttttgcatgattttcctgagttcctttgtgattac
cattatgggttctgtgatgtgatcccacctaattgtatccagttaagaaatttgattttg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggac
atgttgagtgaaattaacattgcaccccggattctcactaatttcactggagtgatgcca
cctcagttcaaaaaggatttggattcctatcttaaaactcgatcaccggtcacttttctg
tctgatctgcgcagcaatctacaggtatccaatgagcctggcaatcgctacaacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacatatccacaacaag
ggcagcacgccttcaatgagcaccatcacccactcggcacacatggacatcttccagaac
ctggctgtggacttggatactgaaggtcgatatctcttcttgaatgcaattgcgaatcag
ctgcggtacccaaatagccacactcactacttcagctgcaccatgctctacctttttgca
gaggccaacactgaagctatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcatttaagttctggaaccatgaatttgtacactgtgccccagaaattgaaaagttattc
cagtcggttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
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integrated database retrieval system
