Sciurus carolinensis (gray squirrel): 124979573
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Entry
124979573 CDS
T08117
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
124979573
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124979573
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124979573
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FraC
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
124979573
NCBI-ProteinID:
XP_047399883
LinkDB
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Position
3:115406584..115545931
Genome browser
AA seq
2006 aa
AA seq
DB search
MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGK
SLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAISRFSATPALYILTPFNPIRK
LAIKILVHSFFNVLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSSFEINITSFFNNSL
DGNGTTFNRTVSMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGI
GVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKEDGVRKSESEDSIRRKGFRFS
LEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRTKDVGSENDFADDEHST
FEDNDSRRDSLFVPHRHGERRHSNVSQASRASRVLPILPMNGKMHSAVDCNGVVSLVGGP
SALTSPAGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTSRQRAMSIASILTNTMEELE
ESRQKCPPCWYKFANMCLIWDCCKPWLKVKHLVNLVVMDPFVDLAITICIVLNTLFMAME
HYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELG
LANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMC
LTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDFVKR
KIREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIG
SSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATS
SSEGSTVDIGAPAEGEQPEAEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRK
TCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLL
KWVAYGFQMYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSV
VNNFSECKALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVEL
QPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEM
TNILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPG
SSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFY
EVWEKFDPDATQFIEFSKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRY
LLKQKVKKVSSIYKKDKGKEADGTPVKEEILIDKLNENSTPEKTDVTPSTTSPPSYDSVT
KPEKEKFEKDKSEKEDKGKDIRESKK
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcacagtcagtgctggtaccgccaggacctgacagcttccgcttctttaccagggaa
tcccttgctgccattgaacaacgcattgcagaagagaaagctaagagacccaaacaagag
cgcaaggatgaggatgatgaaaatggcccaaagccaaatagtgacttggaagcagggaaa
tcccttccatttatttacggagacattcctccagagatggtgtcagagcctctggaggac
ttggacccctactatatcaataagaaaacatttatagtattgaataaagggaaagcaatc
tctcgattcagtgccaccccagccctgtacattttaactcccttcaaccccattagaaaa
ctagctattaagattttggtacattcttttttcaatgtgcttattatgtgcacaattctt
accaactgtgtatttatgaccatgagtaaccctccagactggacaaagaatgtggagtac
acctttacaggaatttatacttttgagtcacttattaaaatactcgcgaggggcttttgt
ttagaagactttacatttcttcgggatccatggaattggttggatttcacagtcattact
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaactatttcagtgattccaggcctgaagaccatcgtgggggcc
ctgatccagtcagtgaagaagctctcggatgtcatgatcctgactgtgttctgcctcagt
gtgtttgctctgataggcctgcagctcttcatgggcaacctgaggaataaatgtttgcaa
tggcccccagataattcttcttttgaaataaacatcacttccttctttaataactccttg
gatgggaacggtaccactttcaataggacagtgagcatgtttaactgggatgaatacatt
gaggataaaagtcacttttattttctggaagggcaaaatgatgctctgctctgtggcaac
agctcagatgcgggccagtgtcccgaaggatacatctgcgtgaaggctggacggaacccc
aactatggctacacaagctttgacaccttcagttgggccttcttgtctctattccgtctc
atgactcaagacttctgggaaaatctttatcaactgacactgcgtgctgctgggaaaaca
tacatgatattttttgtgctagtcattttcctgggctcattctacttaataaatttgatc
ctggctgtggtggccatggcctatgaggaacagaatcaggccacactggaagaggcagaa
cagaaggaggcagaatttcagcagatgcttgagcagttaaaaaagcagcaagaagaagct
caggcagcagctgcagccgcatctgctgaatcccgggacttcagtggtgcgggtgggata
ggagttttctccgagagttcttcagtagcatcgaagttgagctccaagagtgaaaaagag
ctgaaaaacagaagaaagaaaaagaaacagaaagaacagtctggagaagaagagaaggaa
gatggagtccgaaaatcagaatctgaagacagtataagaagaaaaggcttccggttttcc
ttagaaggaagtaggctgacatatgaaaagagattttcttctccacaccagtcgttattg
agcatccggggctcccttttctctccaagacgcaacagcagggcgagccttttcagcttc
agaggtcgcaccaaggatgttggctccgagaacgactttgctgatgacgagcacagcacc
tttgaggacaacgacagtagaagagactctctgtttgtgccacacagacatggagagcgg
cgccacagcaatgtcagccaggccagccgtgcctccagggtgctccccatcctgcctatg
aatggaaagatgcacagcgcggtggactgcaatggagtggtctcgctggtcgggggccct
tctgccctcacctctcctgctgggcagctcctgcccgagggcacgactactgaaacagaa
ataaggaagagacgatccagttcttaccatgtttccatggatttgttggaagatcctaca
tcaagacaaagagcaatgagtatagccagtattttgaccaataccatggaagaacttgaa
gaatccagacagaaatgcccaccctgctggtataaatttgctaacatgtgtttgatttgg
gactgctgtaaaccatggttaaaggtgaagcaccttgtcaatctcgttgtgatggaccca
tttgtagacctggcaatcaccatctgcatcgtcttaaacacactcttcatggccatggag
cactaccccatgacagaacagttcagcagcgtgctgtctgttgggaacctggtcttcact
gggatcttcacagctgaaatgtttctcaagatcattgctatggatccatattattacttt
caagaaggctggaatatttttgatggttttattgtgagccttagtttaatggaacttggt
ttggcaaatgtggaaggattgtcagttctccgatcattccgactgctcagagttttcaag
ttggcaaagtcttggccaactctgaatatgctaataaagatcattggcaattccgtgggg
gcgctgggaaacctcaccttggtgttggccatcattgtctttatttttgctgtggttggc
atgcagctctttggaaagagctacaaggaatgtgtctgcaagatttccaatgattgtgaa
ctcccacgctggcatatgcatgacttcttccactccttcctgattgtgttccgagtgctg
tgtggagagtggatagagaccatgtgggactgtatggaggtcgctggccaaaccatgtgc
cttactgtcttcatgatggtcatggtaattggaaaccttgtggttctgaatctcttcctg
gccttgctcctgagctccttcagttctgacaatcttgcagccactgatgatgataatgaa
atgaacaatctccagattgctgtgggaagaatgcagaaaggaattgattttgttaaacga
aaaatacgtgaattcattcagaaagcctttgttaggaagcagaaagctttagatgaaatt
aaacctcttgaagatctaaataacaaaaaagacagctgtatttccaaccataccactata
gaaataggcaaagacctcaattatctcaaagatggaaatggaaccactagtggcataggg
agcagtgtagaaaagtatgtcgttgatgagagtgactacatgtcatttataaacaacccc
agcctaactgtgaccgtgcccattgccgttggagaatctgactttgaaaatttaaatact
gaggagttcagcagtgagtcagatatggaggaaagcaaagagaagctcaatgcaaccagt
tcatctgaaggtagcacagttgatataggagcccccgctgagggagagcaacctgaggca
gagcctgaagagtccctggaaccagaagcctgcttcaccgaagattgtgtacggaagttc
aagtgctgtcagataagcatagaggaaggcaaagggaaactctggtggaacctgaggaaa
acatgctataagatcgtggagcacaactggtttgaaacgttcattgtcttcatgattcta
ctcagcagtggggctctggcctttgaggatatatatattgagcaacgaaaaaccattaag
accatgttagaatacgctgacaaggttttcacttatatattcatcctggaaatgcttcta
aagtgggttgcatatggatttcaaatgtattttaccaatgcctggtgctggctagacttc
ctgattgttgatgtctcattggttagtctaactgcaaatgccttgggatactctgaactt
ggtgccatcaaatccctcagaacgctcagggctctgaggccattgagagctttatcccgg
tttgaaggaatgagggttgttgtaaatgctcttttaggagccattccatctataatgaat
gtacttctggtctgtctgatcttttggctaatattcagtatcatgggagtgaatctcttt
gctggcaagttttaccactgtattaactacaccactggagagatgtttgatgtaagcgtg
gtcaacaacttcagtgaatgtaaagccctcatagaaagcaatcaaactgccagatggaaa
aatgtgaaagtgaattttgataatgtgggacttggatatctttctctacttcaagtagcc
acatttaaaggatggatggatatcatgtatgcagctgttgattcacgaaatgtagaattg
caacccaagtatgaagataatctgtacatgtatctttattttgtcatctttatcattttt
ggttcattctttactctgaatcttttcattggtgtcatcatagataacttcaaccaacag
aaaaagaagtttggaggtcaagacatttttatgacagaggaacagaagaaatactacaat
gcaatgaaaaagctgggctcaaagaaaccacaaaaacccatacctcgtcctgccaacaaa
ttccaaggaatggtgtttgattttgtaaccaaacaagtctttgacatcagcatcatgatc
ctcatctgcctcaacatggtcaccatgatggtagaaactgatgaccagagtcaagaaatg
acaaatattctatactggattaatctggtgttcatcgttcttttcactggagaatgtgtg
ctgaaattaatctccctgcgttactactattttaccatcggatggaatatttttgatttc
gtggtggtcattctctccattgtaggaatgtttcttgctgagctgatagaaaaatatttt
gtgtcccctaccttattccgagtgatccgtcttgccaggattggccggatcctacgtctg
atcaaaggggcaaaggggatccgcacgctgctctttgctttgatgatgtcccttcctgcc
ttgtttaacattggcctcctgctcttcctggtcatgttcatctatgccatctttggaatg
tccaacttcgcctatgttaagagggaagttggaattgatgacatgttcaactttgagacg
tttggcaacagcatgatctgcctgttccagatcaccacttctgctggctgggatggattg
ttggcacctattctcaacagtggacctccagactgtgaccctgaaaaagatcaccctgga
agctcagttaaaggagactgtgggaacccctctgttggaattttcttttttgtcagttac
atcatcatatcctttctggttgtggtgaacatgtacattgctgtcatcctggagaacttc
agtgttgctactgaagaaagtgcagagcccctgagtgaggatgactttgagatgttctac
gaggtttgggagaagtttgatcctgatgcaacccagttcatagagttctccaagctctct
gattttgcagatgccctggatcctcctctactcatagcaaaaccaaacaaagtccaactc
attgctatggacctgccgatggtcagtggagaccggatccattgcctcgacattttattt
gcttttacaaagcgtgttttgggtgagagtggagagatggatgccctccgaatacagatg
gaagagcgtttcatggcatcgaacccctccaaagtctcttatgagcccatcacaaccact
ttgaagcgcaagcaagaggaggtgtctgctattgttatccagagagcttacagacgctac
ctcctgaagcagaaagttaaaaaggtttcatctatatataagaaagacaagggcaaagaa
gctgatggaacacctgtcaaagaagaaatcctcattgacaaactaaatgagaattccact
ccagagaaaaccgatgtgacaccttctaccacatctcccccttcctatgatagtgtgaca
aaacccgaaaaagaaaaatttgaaaaagacaaatcagaaaaggaagacaaagggaaagat
atcagggaaagtaaaaagtaa
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