Sciurus carolinensis (gray squirrel): 124982083
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Entry
124982083 CDS
T08117
Name
(RefSeq) mRNA-decapping enzyme 1B-like isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124982083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124982083
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124982083
mRNA degradation factors
5'-3' decay
Decapping complex
124982083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Motif
Other DBs
NCBI-GeneID:
124982083
NCBI-ProteinID:
XP_047404249
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All DBs
Position
4:complement(66909832..66960034)
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AA seq
616 aa
AA seq
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MAAVAAGGLVGKGRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLF
VYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEEC
QRIAELMKNLTQYEQLKAHRGAGAGISPVMPNSGEGKEVDILRMLTKAKDEYTKCKTCSE
PKQITSSSAIYDNPNLIKPIPVKPSDNQQQRIPQPNQTLEPEPQHLSLTALFGKQDKATY
QETIELPHTVQQQQQQQQQQEKFPIRQGVVRSLSYEEPRRQSPLMEKQLCPAIQKLMVRS
TDLQPLSELPEQRPCGNGSSHSAGEIVPGPLQPGSPHNIRTLHAGHSASRTQNLLEKLQS
APGAANKYNISTPAPASPVAPNSSRTFSAATPVTPGKGLAQPQLVYFNGSLPPQMPGQQA
HGKGQSTLPRQRLPVSGSQTSSPGVISPQELLRKLQVVQQEQQLQTSHRPALAAKFPVVT
QSSRTGKPLESWINKTSSTEKQAPLLQVISPQRTPTTVAPSLLMSPMVFTQASCTPPRER
DNGLLLLGGQESPAAPTSLLLPLQNPEPSVVASSPLTRLQLQEALLYLVQNDDNFLNIIY
EAYLFSMTQAAMKKTM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtggcggcgggcggcctggtggggaaggggcgcgacatcagcctagcggcc
ctgcagcgccacgacccctatatcaaccgcatcgtggacgtggctagccaggtggccctg
tacactttcggccatcgggccaacgagtgggagaagactgatgtggaaggaactttattt
gtgtacacaaggtctgcttctccaaagcatggattcaccattatgaataggctgagcatg
gaaaatagaacagaacccattactaaagacctggatttccaactccaggacccattcctt
ctctacagaaatgccagattgtccatttatggaatttggttttatgataaggaagaatgc
caaagaattgcagaacttatgaaaaacctaactcaatatgaacagttgaaagcccatcgg
ggagctggagcaggaatctccccagtgatgcccaattctggagagggcaaagaagtagat
atcttaagaatgcttaccaaagccaaagatgaatacacaaagtgtaaaacctgttctgag
ccaaaacagataactagttcatctgctatctatgacaaccccaatctcatcaaaccaatc
ccagtaaaacccagtgacaaccagcagcagcgcatacctcagcccaaccagactttagaa
cctgaaccccaacacttatccttgacagctctgtttgggaagcaagacaaagctacctac
caggaaactatagagctcccccatactgtccagcagcaacagcagcagcagcagcagcaa
gaaaagtttccaattaggcagggagttgtacgctctctgtcctatgaggagcccagaagg
cagtcacctctcatggagaaacagctctgtccagccattcaaaaactcatggtcaggagc
acagacctgcaaccactgtcagagttgcctgaacagaggccctgtggaaatggaagctcc
cattctgctggggaaattgttcctgggcctctccagccagggtctccccataacatcagg
actttgcatgctggacacagtgcttccagaacccagaacctgttagagaagctccagagt
gccccaggggcagcaaacaagtacaacattagtacaccagcacctgcaagcccagttgcc
cccaacagcagcagaaccttctctgctgccactcccgtgactccaggcaagggtctagcc
cagccacaactggtgtatttcaatggctcccttccgcctcagatgccaggacaacaggcc
cacggaaagggacagtccacactgccaagacaaagactcccagtctctggcagtcagacg
agcagccctggggtgatctcccctcaggagttattgagaaagctccaggttgtacagcag
gagcagcagctacagacctctcaccgtccagccttggcagccaagttccctgtggtgacc
cagagctctaggacagggaaacccttggagtcctggatcaacaagacatccagcacagag
aagcaggctcctcttttgcaggtcatctcacctcagcgcactcctactacagtggctcct
tctctgctcatgtcccccatggtgttcactcaagcctcctgcactccaccaagggagagg
gataatggactcttgctcctgggaggccaagaatcacctgctgcacccaccagcctcctc
ctgcccctgcagaacccagagccctctgtggtagccagcagccctctcaccaggctgcag
ctccaagaagccctgctgtacctagttcagaatgatgacaacttcttaaatataatctat
gaagcctatctcttcagcatgacacaagcagccatgaaaaagactatgtga
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