Notothenia coriiceps (black rockcod): 104954271
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Entry
104954271 CDS
T04920
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104954271
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104954271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
New_glue
Spem1
FUT8_N_cat
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
104954271
NCBI-ProteinID:
XP_010779657
UniProt:
A0A6I9NY14
LinkDB
All DBs
Position
Unknown
AA seq
2025 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRADRRVDSDDENGPKPNSDLEAGK
SLPFIYGDTPPRLVSTPLEDLDTFYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPLRR
VAIRVLVHSIFSILIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPIGNNATNSSNVTADDTFF
SHSLLDINTTFGQNTTEKYFNWTVYIGDDANYYFLPGRRDALICGNGSGAGLCPEGFICM
KAGRNPDYDYTSFDSFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSF
YLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYS
GRGARASESSSGTSKLSSKSAKERRNRRKKRKQREEEEEEERGGRDKFHKSESEDSIKRT
SFRFSIDANRLSYEKRCSSPNQSLLSIRESLFSPRRNSRASLFSFRGRARDMGSENEFAD
DEHSTFEESDSRRGSLFLPRRLERRCSNVSQTSLGAPRFMLPANGKMHCAVDCNGVVSLV
GGTSVTTSPVGVLLPEGTTTDTELKKRRFRHPSMDYLDEPVARQRAMSVASILTNTMEEL
EESRQKCPPCWYRFSNTCLIWDCYPAWLKIKDVVCTVVMDPFVDLAITICIVLNTLFMAM
EHYPMTKEFDSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISESCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSM
CLIVFLMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAMGRIQRGIAFVK
SMVRQFFQSLCFGGKGGKGGKGSGLTEESKPLDELHSNGKDNCISNHTSVEITRDPSVVY
VTEGNGRPGGGLVIEVGVDTTGKHPMEECDYMSFIHNPTLTVTVPIAVGESDFENPNTED
FSSDSSDVEGSKETLVFFQKIDIEPHSPSSSEGSTVDIRPPGDGVDSVELEPEESLEPEA
CFTEGCVSRFQCCQINEEEEHFKSWWTLRKTCFVIVEHNWFESFIIFMILLSSGALAFED
IYIEQRRTIKTVLEYSDKVFTYIFILEMLLKWTAYGFVKYFTNAWCWLDFLIVDVSLVSL
VANFMGYSEIAAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWL
IFSIMGVNLFAGKYYYCVNTTNDEVFPIIVVNNKSECLNLVNDSARWRNVKINFDNVGAG
YLALLQVATFKGWMDIMYAAVDSRNLEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGV
IIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANEFQGCVFDFITKQ
AFDIVIMILICLNMVTMMVETDDQTKETALMLYRINLVFITLFTGECVLKMISLRHYYFT
IGWNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLF
ALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQIT
TSGGWDGLLAPILNKREPDCDSQMEHPGNNYKGNCGNPSVAIFFFVSYIIICFLIVVNMY
IAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPGATQFMEYSKLSDFADALDPPLRM
PKPNMLQLISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKV
SYEPITTTLRRKQEDIAALIIQRAFRRFLFCSNMKKASALYKERLKEGMRDPDKDVMVIC
KFREMSTSEKTDMTPSTASPPSYNSVTKSDKDKYEKENKGKGQKK
NT seq
6078 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccacgggcggaccgc
cgcgtcgacagcgatgatgagaacgggcccaagcccaacagcgacctggaggcggggaaa
tctctccccttcatctacggtgacacccctccccgcctggtgtccacccctctggaggac
ttggacaccttctacagcaatcagaagaccttcatagtattgaatcgtgggaagacaatc
ttccgtttcaacgccactcctgccttgtacatcctaagccccttcaaccctctgaggagg
gtagccatcagagttttagtacactcgattttcagcatattgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccagaatgggccaagaatgtagagtac
acattcacagggatttacacctttgagtccctcataaagatcctggccaggggcttctgt
gtggggaagttcactttcctgcgggacccgtggaactggctggattttagtgtcatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccttgaaaactatatcagtcatcccaggcttgaagaccatcgtcggcgcc
ctcatccagtcggtgaaaaagctgtcggacgtcatgatcctcaccgtgttctgcctcagc
gtcttcgcgctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgtgtgcgc
tggccgatcggcaacaacgccaccaacagcagcaacgtcaccgccgacgacacgtttttc
agccactccctgctggatatcaacaccacgtttgggcagaacaccacggaaaaatacttc
aactggacagtgtacatcggcgatgatgccaactactatttcctccctggccgaagggat
gctctgatctgtgggaacggcagcggcgctgggctctgtccagagggctttatatgtatg
aaagccggccgtaaccccgactacgactacaccagcttcgactccttcagctgggccttc
ctgtccctgttcagactcatgacccaggactactgggaaaacctgtaccagcagactttg
cgcgcggcaggaaagccctacatgatcttcttcgtgctggtgatcttcctgggctccttc
tacctggtgaacctgatcctggccgtggtggccatggcgtacgacgagcagaaccaggcc
accatcgaggaagcgcagcagaaggaggaggagttccaggccatgctggagcagctgaag
agacagcaggaggaggctcaggttgccgcggcagcagccacagagagcggagagtacagc
gggaggggggcccgggcctccgagtcctcctcggggacgtcaaagctcagctcgaagagc
gccaaggagcgacgcaacaggcggaagaagaggaagcagagggaggaggaggaggaggag
gagagggggggccgcgacaagttccacaagtctgagtctgaggacagcatcaagagaaca
agcttccgcttctccatcgacgccaacagactctcttatgagaagaggtgctcctcgccc
aaccagtctctcctcagtatccgagaatccctcttctcccctcggaggaacagccgcgcc
agcctgttcagcttccggggccgggcacgcgacatgggctccgagaacgaatttgccgac
gacgagcacagcaccttcgaggagagcgacagccgccgggggtcgctgttcttgccgcgg
cgtctggagcgccgctgcagcaatgtgagccagaccagcctcggggcgccgcgcttcatg
ctgcccgccaacgggaagatgcactgcgccgtggactgcaacggagtcgtgtctctggtc
ggaggaacttctgtcacaacctcgcctgtaggtgtcctgctgcctgagggcacaactaca
gatacagagctgaagaaacgacgcttccgccatccatccatggattatttagacgaacca
gtggcaaggcagagagccatgagcgtggccagtatcctcaccaacaccatggaagagctt
gaagagtcgagacagaaatgcccgccctgctggtatagattctccaacacctgtctgatc
tgggattgttacccagcatggctgaaaataaaagacgtggtctgcacggtggtcatggac
ccgtttgtggatctagccatcacaatttgcatcgtcctcaacacccttttcatggccatg
gagcattaccccatgacgaaagaattcgacagcgtgctctcagttggaaacttggtgttc
actggcatcttcacagcagagatgtgcttcaagatcatcgccctggatccctactactac
ttccaggagggctggaacatctttgatgggatcatcgtgagtctgagtctgatggagctc
ggcttggccaacgtggaaggcctgtctgtgctcaggtccttcagattgctgagggtcttc
aaactggccaagtcgtggcccactttgaacatgctgatcaagatcatcgggaactcggtg
ggcgcgctggggaacctgactctggtgctggccatcatcgtcttcatcttcgccgtggtg
ggcatgcagctgtttggcaagagctacaaggagtgcgtgtgcaagatttcggagagctgc
aagctgccccgctggcacatgcacgacttctttcactcgttcctcatcgtgttccgggtg
ctgtgcggagagtggatcgagaccatgtgggactgcatggaggttgcgggacaaagcatg
tgcctgattgtgttcctgatggtcatggtcattggaaacctggtggtgttaaacctgttc
ctggctctcctcctgagctcgttcagcgccgacaacctggcagcgactgacgacgacagc
gagatgaacaacctgcagatcgccatgggtcggatccagcggggcatcgcgtttgtcaaa
tccatggtgcgccagttctttcagagcctctgcttcggcggtaagggcggtaagggcgga
aagggctccggcctgacggaggagagcaaaccgttagacgagctgcacagcaacggcaag
gacaactgcatctccaaccacacctcagtggagatcaccagagaccccagtgtggtgtac
gtgacagagggcaatggacggccaggaggggggctggtcattgaggttggtgtggacact
acagggaagcacccgatggaggaatgtgactacatgtcatttattcataaccccaccctg
acggtcacagtgcccatcgctgtgggcgagtcggacttcgagaacccgaacacggaagat
ttcagcagcgactcgtcggacgtggagggcagcaaagagaccctcgtcttcttccagaag
attgatatagagccccactctccgagctcatcggaggggagcacggtggatatccgcccc
cctggagacggggtggattcggtggagctggagccggaggagtcgctggaaccagaggcg
tgcttcacagagggctgtgtgagcaggttccagtgctgccagatcaacgaggaggaagag
cactttaagagctggtggaccctcaggaaaacctgcttcgtcatagtggagcacaactgg
tttgagtccttcatcatattcatgatcctgctcagcagcggagccctggcttttgaggac
atttacatcgagcagcggaggaccatcaagacggtgctggagtactcagacaaggtcttc
acctacatcttcatcctggagatgctgctgaagtggacggcttacggcttcgtcaagtat
ttcaccaacgcctggtgctggctcgacttcctcatcgtagacgtgtccctggtcagcctc
gtggccaactttatgggctactctgagatcgccgccatcaaatctctgaggacactgcga
gccctgcggcccctcagggccctgtctcggtttgagggcatgagggtggtggtgaacgcg
ctgctgggggccatcccctccatcatgaacgtgctgctggtgtgcctcatcttctggctc
atcttcagcatcatgggggtcaacctgttcgcagggaagtactactactgcgtcaacacc
accaacgacgaggtcttccccatcatcgtggtcaacaacaagagcgagtgcctgaacctg
gtgaacgacagcgcccgctggaggaacgtcaagatcaactttgacaacgtgggggccggt
tacctggctctgctgcaagtggccacatttaagggttggatggacatcatgtacgcagct
gtggactctcggaatttggaggaccagcctgaatatgaagtgaacctctacatgtacctc
tactttgtcatcttcatcatcttcggctccttcttcaccctcaacctgttcattggtgtc
atcatcgacaacttcaaccagcagaagaaaaagtttggaggtcaggacatcttcatgaca
gaagagcagaagaagtactacaacgccatgaagaagctgggctccaagaaaccacagaaa
cccatcccccggcctgcaaacgagttccaaggctgcgtgttcgacttcatcacaaagcag
gccttcgacatcgtcatcatgatcctcatctgcctcaacatggtgaccatgatggtggag
acggacgaccagacgaaggaaaccgccttaatgctctaccggatcaacctggtcttcatc
acgctgttcaccggggagtgtgtgctcaagatgatctccctgcgccactactacttcacc
atcgggtggaatatattcgactttgtggtggtgatcctgtccattgtaggtatgttttta
tccgaagtcatcgagaagtactttgtgtccccgacgctgttccgagtgatccgtctggcc
aggataggtcgcatcctgcgcctgatcaaaggtgccaaaggcatccggacccttctcttc
gctttgatgatgtccctccccgccttgttcaacatcggactcctcctcttcctggtcatg
ttcatctacgccatcttcggcatgtccaacttcgcctacgtgaagcgagaggcggggatc
gacgacatgttcaacttcgagacgtttgggaacagcatgatctgtctgtttcagatcacc
acgtcgggggggtgggacgggctgctggcccccatcctgaacaagagggagcccgactgt
gacagccagatggagcacccgggcaacaactacaaaggtaactgcggcaacccgtcggtg
gccatcttcttcttcgtcagctacatcatcatctgcttcctcatcgtggtcaacatgtac
atcgccgtcatcctggagaacttcagcgtggccacggaggagagcgccgagccgctgagc
gaggacgactttgagatgttctacgaggtgtgggagcgcttcgaccccggcgccactcag
ttcatggagtacagcaagctgtcggactttgcagacgccctggacccgccgctgcgcatg
cccaaacccaacatgctccagttgatctccatggacctacccatggtgagcggcgagcgc
atccactgcctggacatcctgttcgccttcaccaagcgcgtgctgggcgagagcggcgag
atggacgtgctgcgcgggcagatggaggagcgcttcatggcctccaacccctccaaggtg
tcctacgagcccatcaccaccacgctgcgccgcaaacaggaggacatagcggcgctcatc
atccagagagccttccgtcgcttcctgttctgcagcaacatgaagaaggcctccgccctc
tacaaggagcggctgaaggagggcatgcgggaccccgacaaggacgtcatggtcatctgc
aagttcagagagatgtccacctcggagaaaacggacatgactccctccacggcctcccct
ccctcctacaacagcgtgaccaagtcggacaaggacaaatacgagaaggaaaacaaaggg
aagggccagaaaaaataa
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