Notothenia coriiceps (black rockcod): 104955432
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Entry
104955432 CDS
T04920
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104955432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104955432
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104955432
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104955432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
DUF3819
DUF1631
Motif
Other DBs
NCBI-GeneID:
104955432
NCBI-ProteinID:
XP_010781062
UniProt:
A0A6I9NYN7
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MPVLRPTGDFVPFAAPPSTPAVTTTPCTTTGPPTPQFSYHDINVYALAGLAPHININVNI
SLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKKQAWSTGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQN
LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGT
GAS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttttgcgaccaacaggggactttgttcctttcgccgcccccccctcaactcca
gctgtcactaccaccccttgcacaaccaccggcccccccacccctcagtttagttaccac
gacatcaatgtgtatgccttggcaggcctggctccacacatcaatataaatgtcaacatc
tcgctgctgcaggcccatccccagctgaagcagtgtgtacggcagtcggtggagcgtgct
gttcaggagctggtgcatccggtggttgaccgctctatcaaaatagccatgacgacctgt
gagcagatcatccggaaggactttgctttggattcggaggagtcccgcatgcgtgtggct
gcccaccatatgatgaggaacctgactgctggcatggccatgatcacctgccgcgagcct
ctgctcatgagcatcgccaccaaccttaagaacagctttgctgctgcgttaagggctcca
accccacaacagagggaaatgatggaagaggctgcagccaggattgctcaagacaactgt
gaattagcatgctgcttcattcagaaaacagctgtggagaaggctggccctgaaatggac
aagagactagccacggagtttgagctgaggaagcatgcacgccaagaaggacggcggtac
tgtgatcctgttgttctgacgtaccaggctgaacgcatgccagaacagatcagactcaag
gtaggaggcgtggacccgaagcagctggcagtgtatgaggagtttgccaggaacgttcca
ggtttcttacccagtaatgatctctcccaacccactggcttcttggctcagcccatgaag
aaacaagcgtggagcacgggatggcccatgtacgcacagctgctgattgatctcttcaag
tacctggcccccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaag
ggcacactgcgagtgctactggtcctgctgcacgacttcccagagttcctctgtgactac
cattatggtttctgtgatgttatcccacccaactgcatccagctccgcaacctcatcctc
agtgccttcccacgcaacatgaggctcccagaccctttcacacccaacctcaaggtggac
atgctgagtgagatcaacatcgcgccccgtatcctcaccaacttcacaggcgttatgcct
tcccagttcaagaaggacctggactcgtacctgaagactcggtcaccagtcaccttcttg
tctgagctgcgcagcaacctgcaggtgtctaacgagccaggaaaccgctacaacatccag
ctgatcaacgcgctggtgttatatgtgggcacacaggctatcgctcacatccacaacaag
ggcagcaccccctccatgagcaccatcacccactctgcacacatggacatcttccagaac
ctggccgtggacctggacactgaggggcgttacctgttcctgaacgcgatcgccaatcag
ctgcgttacccaaacagccacacccactacttcagctgcaccatgctctacctgttcgcg
gaggccaacaccgaggccatccaggagcagatcaccagggttctgttggagaggctgata
gtgaacaggcctcacccatgggggctcctcatcaccttcatcgagctgatcaagaaccct
gccttcaagttctggagccacgactttgtgcactgtgcccccgagattgaaaagctgttc
cagtcagtagcccagtgctgcatgggacagaagcaagcccagcaggtgatggagggcacc
ggtgccagctag
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