Notothenia coriiceps (black rockcod): 104955433
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Entry
104955433 CDS
T04920
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104955433 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104955433 (cnot1)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104955433 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104955433 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
CNOT1_HEAT
DUF2891
Motif
Other DBs
NCBI-GeneID:
104955433
NCBI-ProteinID:
XP_010781063
UniProt:
A0A6I9P200
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MGAWSDEECFRLIFCSSHYRKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPDMLVLAL
LQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSMAEWYMR
GEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREH
GEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAGSVSQELSE
TILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSLNLGGTATS
HTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSIGSLSSQLPSMDSGPLG
TGIGSSIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEA
NSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDK
ELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDY
PQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQSQQPGVP
KAPQPGQPSTLVTTTTTTTTVAKTPTITRPTPSTFKKDVPPSINTTNIDTLLVATDQTER
IGEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSIEPNFHG
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMIFRPQNPWTMAIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDNLKSLEEQLSAPKKEAKPPE
EMLPVSTGGLTEKNPRPDNCAPAGRGVFTASSRQPLANARGEWWPSNSSPASNYPAPFDG
EGP
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgtggagtgatgaggagtgttttcgactgattttctgctcatctcattacagg
aaaagtctggacctggtggagagcctgctgaggctgtcggaggtgggccagtacgagcag
gtgaagcagctgttcagctttcccatcaagcactgcccagacatgttggtgctggcattg
ctgcagatctccacttcctggcacacactgcgccatgagctcatctccaccctgatgcct
atcttcctgggcaaccaccctaactctgccatcatcctgcactacgcctggcacggacag
ggacagtctccctctatccgtcagcttattatgcattcaatggcagagtggtacatgagg
ggggagcagtatgaccaggccaagctgtcacgcatccttgatgtggcccaggacttgaag
tctctgtcgatgttgctgaatggtactccatttgcttttgttattgaccttgctgcactt
gcttctcgtcgtgaatacctcaaacttgataaatggctgactgacaaaatccgagagcac
ggggaaccttttatccaggcatgtgtgacattcctgaagaggcgctgcccatccattatg
gggggtctggcaccagacaaggaccagcccaaaagcgcccagctgccccctgagacctta
gccaccatgctggcctgcctgcagtcctgtgcggggagcgtgtcccaggagctgtcagaa
actatcctaaccatggttgccaactgcagcaatgtaatgaataaagcccggcaacctcca
ccgggggtgatgccaaagggacgggcccccagcaccagcagcctggatgccatctcccct
gtacagatggactctctctccggcatggggtccctgaatctggggggcacagccacctcc
cacactcagagcatgcagggcttcccaacctcactgagctcagctttcagtaatccccag
tccccggctaaagccttcccccccctcaccaaccccaaccccagtacaccatttgggggc
attgggagcattgggagcctgtcctcgcagcttcctagcatggactctggtcccctgggc
acaggcattggctccagtattggctctagtctggggatgccgactgtgaacaccgaccca
tttggcaccaggaagatgagcacaccaggcctgaacccaccaacctttcagcagactgac
ctttctcaggtttggcccgaggcgaaccagcactttagtaaggagattgacgacgaagca
aacagttacttccagcgcatctacaaccacccacctcatccaactatgtccgtggatgaa
gtactggaaatgctgcagaggttcaaggattcaaccatcaagagggagcgagaggtgttc
aactgcatgcttcggaacttgtttgaggagtacagattcttcccccagtacccagacaag
gagctgcacatcactgcctgcctttttggtggcattatcgagaagggtcttgtcacctac
atggccctgggcttggccctccgatatgttcttgaagccttaagaaaaccctttggatcc
aaaatgtattactttggaattgccgccctagataggtttaaaaacagactaaaggactat
cctcaatattgtcaacatctggcttcaattgcccacttcttgcaattcccccaccattta
caagagtatatcgagtatgggcaacagtcacgggaccctccggtgaagatgcagggctcc
atcaccacgcctggaagtctggcactggcacaggtccagtcgcagcaacccggggtccca
aaagctccacagccaggccagcccagcactctggtcaccaccaccaccactacaaccact
gtagccaagaccccgaccatcacaagacccacacccagcaccttcaagaaggatgtgcca
ccctctataaacacaaccaacattgacaccctgctggtggccaccgaccaaacagaacgg
attggagagcctcccgagaatgtccaggagaagattgcgttcatattcaacaacctctct
cagtccaacatgacacaaaaggttgaagagttgaaggagactgtgaaggatgagtttatg
ccctgggtgtctcagtacctggtgatgaagcgtgtcagcatcgagcccaacttccacggc
ctctactccaacttcctggacactctcaagaacccggagtttgtcaagatggtcctcaat
gagacctacagaaacatcaaggttctgttgacatctgacaaggcagctgccaacttctct
gatcgctcgctgctgaagaacctgggccactggttgggcatgatcacactggccaaaaac
aagcctatcctatacacagatttggaggtgaagtctctgctactggaagcatatgtgaaa
ggccagcaggagctcctttatgtggttccatttgtggccaaagttttggagtccagtctg
cgaagcatgatcttcaggccccagaacccctggaccatggccatcatgaatgttcttgca
gagctgcatcaagaacatgacctcaagctgaacctgaagtttgagattgaagttctgtgt
aagaacttgtctttggacatcaacgacctgaagccagggaccctgctgaaagacaaagac
aatctgaagagtctggaggaacagctgtctgcaccaaagaaagaggccaaacctccggaa
gagatgctgccagtttctaccggtggtttgaccgaaaaaaacccccggcccgacaactgc
gcacccgctggccgtggtgtcttcacagcctccagccggcaacccctcgccaatgcgcgt
ggcgagtggtggccttccaacagcagccccgcgtctaattatcccgcgccttttgatgga
gaagggccgtag
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