Notothenia coriiceps (black rockcod): 104966024
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Entry
104966024 CDS
T04920
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04510
Focal adhesion
ncc04512
ECM-receptor interaction
ncc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104966024 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104966024 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104966024 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncc00535
]
104966024 (col9a2)
Proteoglycans [BR:
ncc00535
]
Extracellular matrix (ECM) proteoglycans
Others
104966024 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104966024
NCBI-ProteinID:
XP_010793427
UniProt:
A0A6I9PYD2
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQGGPPGPSGTPGSDGMDGEKGPPGTPGP
LGLKGEPGEPGLDGAPGENGIDGLIGAKGDRGPFGNPGPKGQSGPTGEPGLPGPGLPGLA
GAPGPIGLPGEIGINGPKGGMGSSGASGLPGPPGKPGSPGKFIGGEEGSADFQCPLNCPA
GVKGPQGLQGIKGHKGRAGVLGEPGSIGKSGPRGEIGISGEQGIPGPPGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPKGPPGGAGDKGDKGSRGITGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGLAGRPGAPGPQGHAGLPGGPGTKGGPGGKGEPGPRGHV
GLQGTSGPLGEPGVPGEAGMEGVPGPKGDRGQRGAVGPQGVVGKPGGQGERGPMGVPGAQ
GLGGTKGDKGFQGKGGSKGDDGDPGVEGLAGENGDKGMSGEPGPKGQQGIRGETGHNGPT
GDPGKPGDVGPSGLPGPRGLNGERGVPGMSGISGTAGRDASDQHIIEVVLKMLQERLAAV
AVSARRAVLGGAGVMGPPGAPGPPGSPGSQGQHGLPGSRGIPGMFGGPGQVGNTGLKGKR
GLKGERGDPGKPHPGAPGPPGIPGPPGVDGVARDGRHGERGPQGSAGEAGYPGKAGNGGL
PGFCEAAMCLAASAYTSPRLQEAGRIKGPNI
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtcattctgcagaccctgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccagggcggcccaccaggcccctcc
ggcacccccgggtcggacggcatggatggagaaaaaggacctcctgggacccctggtcca
cttggactgaagggagagccaggagagccaggcctcgatggagcgccaggagagaacggc
attgatggtctgattggagcaaagggggatcgcggtccttttggaaaccctggcccgaag
ggtcaatctggacccactggggaacctggtcttcctggacccggcctcccaggactggct
ggcgctccagggccaattggtcttccaggtgaaattggaataaatggaccaaagggtggt
atgggatcatccggagcttctggacttcctggacctcctggcaagccaggctctccaggg
aagttcatcggtggagaggagggaagtgccgacttccagtgccctcttaactgtccggct
ggagttaaaggcccccagggactgcagggaatcaagggacacaaaggacgtgctggagtt
ctcggagagcctggcagcattgggaaatcgggtcccaggggagaaattggcatctctggg
gagcagggcatcccaggacctccgggtccgatgggtctgagaggttatccaggaatgatg
ggtcctaaaggggaagcagggccccgcggctacaagggcatcaacggacctgtaggaatt
cccgggcctcctggtgaggaaggacccaagggaccacccggaggggcaggcgacaaggga
gacaaaggcagccgaggtatcacgggcccacagggcgcggttggcaagaaaggagagaat
ggtctgccgggcattgacggaaaggatggcacacctggtattcctggaatcaagggcggc
cctggcctggctgggaggcctggtgctcccggtcctcaggggcatgcgggattacccggc
gggccagggacaaaaggaggacctggagggaagggcgagcctggacctcggggccacgtt
ggcctgcaaggcacctcaggacctctgggtgagcctggtgttcctggcgaggctggtatg
gaaggcgttcccggacccaagggcgacagaggccagcggggagcagtgggtccacaggga
gtagtcggaaagcctggaggacaaggagagagaggaccaatgggtgttcccggtgctcag
ggtctcggtggaaccaagggggacaagggtttccaaggaaaaggcgggtcaaagggagac
gatggtgaccccggtgttgagggattggctggcgagaatggcgataagggtatgtctggt
gaacccgggcccaaaggacagcaaggaatcaggggtgaaacgggacacaatggacccact
ggagaccccggtaaacctggagacgtgggcccctcaggactgcccggccccagggggctg
aacggagagcgaggagtacccggcatgtccggtatttcagggacagcgggccgcgatgca
tcagaccagcatattatcgaggtggtgctgaagatgttgcaggagaggctagctgctgtg
gcggtgagcgccaggagggcagtgctgggcggagccggtgtgatgggaccccccggcgcc
cctggaccccctggatcacctggtagtcaggggcaacatggcttacctggatcccgcggc
attcccggcatgttcggagggcctggacaggtcggaaacaccggacttaaaggaaagaga
ggacttaagggagaaagaggagatcctggtaaaccccacccaggagcaccaggaccccca
ggaataccaggtcctcctggtgtcgatggtgtggctcgggacggtaggcacggcgagcga
ggaccccagggatcagccggagaggcggggtaccccggtaaggcgggcaatgggggtctc
ccagggttctgcgaggcggccatgtgcctggctgcgtcggcgtacacctcccccagacta
caggaggcgggccgcatcaaaggacccaacatttag
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