Nymphaea colorata (blue-petal water lily): 116253657
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Entry
116253657 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116253657 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116253657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116253657
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116253657
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116253657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
116253657
NCBI-ProteinID:
XP_031484448
LinkDB
All DBs
Position
4:complement(23270243..23297563)
Genome browser
AA seq
2444 aa
AA seq
DB search
MLPFSPTISAEIASLLHSLTSSNYQSVLHDLCQFVEYGIDGCILLLQICLDQVKFHDGDL
QSMQLKSELLSVIFRYLLERPNFSTVFCQSLRTQVSEIYLEDLSKALHLSIPEKIGIGLA
LSDSDDMDVRLKGQNFCMVQIKELSASPGHIESDDLIQNIIMFLHRCEGLSKHVDAFIAM
LSLVQMKEKTPFILSPMFSDPLSESGGMRSLDISCESSEHDFNTLLAEIQKEISMDDIIR
ELGYGCTLSGSHCKEILSLYLPLNEVSVARIISTIVRTHTGLEDSQTAYATFCSALCNSS
VADSSWMNSWNIDVLLDSIKQIAPETNWKVVMEYLDHEGFYLPDEKAFLLLMSIYRNACQ
DPFPLSAVTGVTWKNAEGQLSFLKYAIPASPEVFTFSHAARQLSYMELPQGNRIQQIFPN
MSWMCLDLLQVLCELAEKGHAGTVRALLEHPLKHCPELLLLGVAQIKTAFNLIQFELSST
IFPMLLANDPKSSGLHQLWLVNRDLVLRGFIDIHDADPDSALRILEICHDLKILHPVLDM
SPFSFGIKLAALASKKEYLDLEKWLNENLNIYKDTFFEACLKFLKEKMLFDATNDAPANP
FQHSGGGSSVSPETASVFFKVLQAHSGHLVSRQLPDEMKRLHAATVHANPRGGAADSSSP
EGYPDDIEAEANSYFHQLFSEQLLMDAMIQMLARFSRSSDCRELAIFDCMIHNLFDEYKF
FQKYPEKQLKITAVLFGSLIKHQLVSHLTLGVALRVVLDSLRKSVDSKMFLFGSKALEQF
MDRLEEWPQYCNHILQISHLRATHPELVSYIERILARISSSQSESIGGNSASSDQPQNNI
SLEATETADMNVSSTVQSLPQVSSQQPLQQRHPSYLEDRHKASNAPVSLVKPLLSSSVQS
PSIPNNVDLVNVQKSTASQSSQSVPSLSPSTAPTSMLTSPGLLRSSRGLTPAGVLRQTTY
NTGFGAALNIETLVAAAERRETPIEAPPSEVQDKIFFMINNISAANVEIKAKEFIEILKE
QYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKSLNKEIVKATYENCKVLLRSELIKS
SSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKQLIIEAYEKGLMIAVIPFTSKILEPC
QSSLAYQPPNPWTMGILGLLAEIYALPNLKMNLKFDIEVLFKNLGVEMKDAKSTSLLKNR
VREVEGNPDFSNKDLGASQQQVVADLSTGIIPPLGQVDLQPEVVIPPHPSSHSSYAGSLH
LSSSTLGEDEKIGNLGLTERIPSAQGISQVAPTQAPFSVNQQLSMPIPNLGTHVIINPKL
NPISQQLQLPRIVPLSMERAMREIISPVVERSVNIACMTTKELVSKDYAMESDESRTHNA
ANLMVASLAGSLAHVTCKEPLRLAISNQLRNYLPSVNMSNLASDVLEQVVQIVTNDNLDL
GCALIEQVATDKALQRIENEFAELLSLRRKQRENLNAAFYEASTYSQGTLARLPEALRPK
PGRLSAAQQRVYEDFARFPWQNQPSQSSNAISSAQPASSGGFVGSGLSRAYVSSSVPINS
SIYSTTQLAAGFGSTVQPSDHIPEELDTGITCNPGTPDAATQSITEASSFASSALPAVPT
EVHPGESANSVKDSVPSLQPSLPQSAAERLGASISEPLTTGDALDKYEAVAQKLENLVAK
DAREAEIQVPIAEVPEIILRCVSKDEAAMAIAQKVFKSLYEHSSNSVLVSSNLAILVAIR
DVCKLVVKELTSWVIYSDEERKYNKDIIFGLIRSELLNLAEYNVHLAKLIDGGKNKAATD
FAIALVQSLVAQELGVSASEFQSLLDALGKLSMRTGLPESLQQLVEIARNPSNAASQPTV
VSGSVDKAKFIRDKKVQPLSRAVASREGTYSTTTESVAADSAAFREQVAYLFTEWGRICE
SPGSNEAAYLSYLSQLQQRGILKGDDVSDSFFRILMEIAVSHCLNLDGVSPSLIPLQGAH
VQNLSFTAVDMYAKLVFLLVKFYASDQGSNKIMLFPKVLTVTVRFIQKDAEERKAAFNPR
PYYRLFINWIFDFNSTDPILDAINFQVLTALANAFHALQPLKVPGFSFVWLELVSHRSFM
PRLLMSNSPKGWPFIQKLLVDLFKFLEPYLRNAELGEPVLFLYKGTLRVLLVLLHDFPEF
LCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPFTPNLKVDLLPEISQPPRILSDVD
GALKVKQMKAELDEYLKTRQPGSTFLTELKQRLLLPQAEASLAGTRYNVPLINSLVLYVG
MQQEIQQMQSKSAPQQLAVPTPRMTNSAYMDIFQKLIVDLDTEGRYLFLNAVANQLRYPN
NHTHFFSCVLLFLFAEANQDIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPLYNFW
NRSFTRCAPEIEKLFDSVARSCGGPAVKAVDDSLVSGPISDNSH
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgttttctcccaccatctcggcggagatcgcgtctttgcttcactccctcact
agctccaactatcaatcggttctccacgatctatgccagtttgttgaatatggaattgat
ggctgcattttgcttcttcaaatctgcttggatcaagtcaagtttcatgatggagatctg
cagagcatgcaactgaaatcagaactcctttctgttatatttagatatttgttggagagg
ccaaatttcagtactgtcttttgtcaatcgttaagaactcaagttagtgagatttacctt
gaagatctatctaaggcactgcacctctcgatccctgagaagattggcattggtctggct
ttgtcagattctgatgatatggatgttagattgaaaggtcaaaacttctgcatggtccag
atcaaggaactgtctgctagtcctggtcatatagaatctgatgacctaattcagaacatt
attatgtttcttcatcggtgtgaggggctctcaaagcatgttgatgcttttatagcaatg
ctatctctagtgcagatgaaagagaaaactccttttatattgtccccaatgttttctgat
cctttaagtgaatcgggtggtatgaggagtttggacatctcctgtgagtctagtgaacat
gacttcaacactttgttagctgagatacagaaagagataagcatggatgatattataaga
gaactgggttatggatgtactcttagtggttcccattgcaaagagatactttcactatat
ttaccattaaatgaggtttccgttgcgaggataattagcaccattgtgcgtacacataca
ggccttgaggatagtcagactgcttatgcaactttctgctctgctctttgcaacagttca
gttgctgattcttcatggatgaattcctggaatattgacgttcttctagattctattaag
cagattgcacctgaaacaaattggaaagttgtgatggaatacctggatcacgagggattc
tatttgccagatgaaaaggctttcttgcttctcatgtccatatacagaaatgcatgccag
gatccttttccactgtctgccgtaactggtgttacttggaaaaatgctgaagggcagctg
tcatttctgaaatatgctatacctgcgtcacctgaagtattcacgttttctcatgctgca
agacaattgtcttacatggagttgccccaaggaaataggattcaacaaattttcccaaac
atgtcatggatgtgtcttgatttgctacaggtgttgtgtgaactggcagagaaggggcat
gctggtactgtgcgtgctttgcttgagcaccctctgaaacattgccctgagcttttgctt
cttggagttgctcagataaagactgcattcaacctcatccaatttgagctatcttcgacc
atctttcctatgcttcttgcaaatgatccaaaaagtagtggccttcatcagctttggctg
gttaaccgtgatctagttctgcggggcttcatagatattcatgatgctgatccagacagt
gctttgcggatcttggagatttgtcatgatttgaagattctacaccctgttttggatatg
agtccattctcattcggtattaaattagctgctcttgcatctaaaaaggaatatctggat
ctcgaaaaatggctgaatgaaaatcttaacatctataaggacacattctttgaggcttgt
ctgaagttcttgaaagaaaaaatgctttttgatgctacaaacgatgcaccagctaatcct
tttcagcattctgggggtggttcaagtgtttctccagagacagcttctgtgtttttcaag
gttcttcaagctcactctgggcatcttgtctctcgccaacttcccgatgaaatgaaaaga
ttgcatgcagcaactgttcatgcaaacccacgtggtggagctgcagattcatcatcacca
gaagggtatccagacgatatcgaggcagaagcaaactcttacttccatcaattgttttca
gaacagttgttaatggatgcaatgattcaaatgcttgctcgttttagcagatcatctgat
tgtagagagctcgcaatatttgattgtatgatccataatttgtttgatgagtacaagttc
ttccagaaatatccagagaaacagctgaaaataactgcagttctttttggttctctcata
aaacatcagcttgtatcccatctgactcttggtgttgctctacgggttgtccttgattct
ttgcgcaagtcagttgattcaaagatgttcttgtttggttccaaagcattggagcagttc
atggaccggttggaggagtggccacaatactgcaatcatattttacagatatctcattta
cgtgctactcaccctgagctagtgtcatatattgaaaggattctagctcgtatctcatca
agccagtctgaatcaattggagggaatagtgcttcttcagatcaaccacaaaataatatt
tctctagaagccactgaaactgcagatatgaatgtttccagtactgtccagtctttgcca
caagtttcctctcaacaaccgctgcaacagagacatccaagttatttggaggatcgccat
aaggcttccaatgctccagttagccttgttaaacctcttttgtcttcttcagtgcagtca
ccctcgattcctaataatgttgacctagttaatgttcaaaagtcaactgcatctcagtca
tctcaaagtgtgccatctctttcaccttctaccgcacccacttccatgttgacatcccct
ggacttcttcgctcttcaagagggttgacacctgcaggtgtgcttagacagacaacttat
aatactggttttggggctgctttgaatattgaaacacttgttgctgctgctgagaggcgg
gaaactccaatagaggcacctccttcagaagttcaggacaagatatttttcatgattaat
aacatttcagcagctaatgtggaaatcaaagcaaaggagttcattgagattctaaaagag
caatattatccctggtttgctcagtatatggtgatgaaaagagcaagcattgagccaaat
tttcacgatctgtatctgaagttcttggacaaggtgaattcgaaatcattaaacaaggaa
attgtcaaagctacttacgagaattgcaaggttcttctcagatcagaactcataaaatca
agttcagaggagagatcattgctcaaaaaccttggtagctggcttggaaaatttacaatt
ggtaggaatcaagcattgagggctagagaaatagatccaaagcagctaataattgaggca
tatgaaaaagggttgatgattgcagtgattccatttacttcaaagatcttggaaccttgt
caatccagcctggcttatcagcctcccaatccgtggacaatgggcattcttggtttgcta
gcagaaatttatgctcttccaaatctgaaaatgaatttgaagttcgacatagaagtgtta
tttaagaacttaggtgtggaaatgaaagatgctaaatctacctctcttcttaaaaatcgt
gtccgagaagtggaaggaaatcctgatttttcaaataaagatcttggtgcatctcagcag
caggttgttgctgatcttagtactgggataatccctccactgggtcaagtcgatctgcag
cctgaagtggtcattccaccacatcctagcagccattcaagttatgctggttcacttcac
ctttcatcaagcacgttgggggaggatgagaaaattgggaacctaggattgactgaacgc
ataccttctgctcagggaatatcacaggttgctcctacgcaggcacctttttctgtcaat
caacagctttcgatgccgatccctaatcttggaactcatgtgattatcaatccgaagctc
aatccaataagtcagcaactgcagcttccaagaatagtgccattatccatggaaagggct
atgagggagataatatcccctgttgttgagcgtagcgtcaacatagcatgcatgacaaca
aaagaacttgtttcaaaggattatgccatggaatcagatgagagccgtacacacaacgct
gcaaacttgatggttgcaagtctagcaggaagtttagctcatgtgacatgcaaggaaccc
ctccggcttgccatttcaaatcagctgaggaattatcttccatctgtaaatatgtcaaat
cttgcaagtgacgttctcgaacaagttgtgcagattgtaacaaatgacaatcttgattta
ggatgtgcattaattgagcaagttgcgacggataaggctcttcaaagaattgaaaacgaa
tttgctgaattgctgtctctgcgaaggaaacaaagggaaaaccttaatgctgccttttat
gaggccagtacctattcacaaggaactctagctcgccttccagaagctcttcgtccaaag
cctggtcgcttgtctgctgcacaacaaagagtatatgaggattttgctaggttcccatgg
caaaaccaaccaagccagagttcaaatgctatatcttctgcacaacctgcatcttctggt
ggctttgttggttctggtttgtctcgtgcttatgtatccagctcagtgccgattaactca
agcatttattcaaccacacaactagctgcaggatttggttctactgtgcagccttcagac
catatccctgaggaactggacactggaattacttgtaatcctggaacacctgatgcagcc
actcagagtattacagaagccagttcttttgcatcatcagcattgcctgctgtgcccact
gaagtgcaccccggagaatctgctaattctgtaaaggactccgtgccttcattacagcca
tctcttccacaatcagccgcagagcgcctgggggccagcatatctgagcctttgactaca
ggtgatgcattagacaaatacgaggcggtggcccagaagcttgagaatttggttgccaaa
gatgcaagggaggctgaaattcaggttcctattgctgaggttcctgaaatcattcttaga
tgtgtaagcaaagatgaggctgccatggctattgcacaaaaggttttcaagagcttatat
gaacactcatcaaatagtgttcttgtatcttctaatcttgctatcctggttgcaattaga
gatgtatgcaaacttgtcgtcaaggaattgaccagctgggttatatactctgatgaggaa
cgtaagtacaacaaggatatcattttcggccttattaggtctgaactgctaaatcttgct
gagtacaatgtgcatctggcaaaactgattgatgggggaaaaaataaagctgctacagat
tttgctattgcgctggtccaaagtttggtggctcaggagcttggtgttagtgcatcagag
ttccagtcccttcttgatgcactggggaagctttccatgagaactggactaccagagtca
ttgcagcaattggtcgagattgcaagaaatccttctaatgcagcaagccagcctacagtt
gtgagtggcagcgtagataaagctaagttcattcgtgacaaaaaggtgcagcccttgagt
cgtgcagttgcaagcagggaaggaacatactcaactactacagaatctgttgctgcagat
tctgctgctttccgggaacaggttgcttatctattcacagaatggggtcgaatatgtgaa
tctcctggaagcaatgaggcagcttatctttcttatctttcacagctgcaacaacgtgga
atactcaagggtgatgatgtttctgatagcttcttccgcatactcatggaaattgctgtg
tcacattgcctaaatctggatggcgtttctccttctttaattccacttcaaggtgcacat
gtgcaaaacctcagcttcacagcggtcgatatgtatgcaaagcttgtgtttttgctggtc
aagttctatgcttctgatcaggggtcaaacaagatcatgctttttcctaaggttttgact
gtaacagtgagattcattcagaaggatgctgaagaaaggaaggcagcttttaatccaagg
ccatattataggttgttcataaattggatttttgactttaattctactgatccaattctt
gatgctattaacttccaggttttaactgcattagctaatgcctttcatgcacttcagcca
ttgaaagttcctggtttcagttttgtttggcttgagttggtgagtcacaggagctttatg
ccaaggttgcttatgagcaactctccgaagggatggccttttatccaaaaattgcttgtt
gacttattcaaatttctggaaccctacttgaggaatgctgagcttggagagccggttcta
tttttatacaaaggcacacttagggtgctattggtactactacatgattttccagagttt
ctctgtgattatcacttcagtttctgtgatgtgattccacccagttgcatacaaatgcga
aatgttattctgagcgcatttccacgcaacatgcgactacctgatccgtttacaccaaac
cttaaggttgatctccttcctgaaatcagccaaccaccaaggattctctctgatgtagat
ggtgccttaaaggtgaaacaaatgaaggctgaactggatgaataccttaagactaggcaa
cctggatccacattcttaacagaactgaagcagagattgttgcttccccaagctgaagca
tccttagctgggaccagatacaatgtccccttgatcaattcacttgtcctatatgttggt
atgcagcaggagatccagcaaatgcagagcaagtcagcgccacaacagcttgcagttcca
actccaaggatgacaaatagtgcctacatggatatttttcagaagctaatcgtggatttg
gatacagaagggcgctatcttttcttaaatgcagttgcaaatcaactgcgctatccgaac
aaccatacccattttttctcctgtgttctccttttcctctttgctgaagcaaatcaagat
atcatccaagagcagattacaagggtgctgttagagcgcctgattgtcaaccggccacac
ccttgggggttacttataactttcattgaactcataaagaaccctttatacaacttctgg
aatcggtcatttacgcgatgtgcgccagagattgagaagctctttgattctgttgcaaga
tcgtgtgggggcccggcagtcaaggctgtggatgattctcttgtttctggtcccatttca
gacaacagccactaa
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integrated database retrieval system
