KEGG   Nymphaea colorata (blue-petal water lily): 116256406
Entry
116256406         CDS       T07418                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    116256406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncol03021]
    116256406
   03019 Messenger RNA biogenesis [BR:ncol03019]
    116256406
Transcription machinery [BR:ncol03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     116256406
  RNA polymerase I system
     116256406
Messenger RNA biogenesis [BR:ncol03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     116256406
SSDB
Motif
Pfam: KOW1_SPT5 Spt5-NGN KOW4_SPT5 KOW6_SPT51-2 KOW KOW2_Spt5 KOW7_SPT5 KOW5_SPT5 KOWx_SPT5 Spt5_N GPKOW_C KOW6_SPT5 DUF4438 zf-CCCH_10
Other DBs
NCBI-GeneID: 116256406
NCBI-ProteinID: XP_031488629
LinkDB
Position
6:10261175..10271076
AA seq 1037 aa
MARRYDDDEEEEELEEEEEEVAEEDDEDYEELDEEGDGKRKRKYRRSEFIDDVAEEDDDE
EEEEDERPRKRKSRPASQFFDDIAAVASDDDEEEEEGEEDFINDVGTDLPEEEGRAMHRR
PFLPREDEQDVEDLERLIQEKYGRSAQSEYDEETTDVEQQALLPSVKDPKLWMVKCAIGH
EREVAVCLMQKYLDLQSQGNDLQIRSVIALDHLKNYIYVEADREAHVKEAIKGLRNIFSS
SKVMLVPIKEMTDVLSVESKSVELSKDKWVRVKLGTYKGDLAKVVDVDNVRQRVTIKLLP
RIDLQALANKLEGKEVGKKKTFVPPPRRINMREIREMNFPVERKWDPVTGLHFETVDNNM
IKDGYLYKVVSVKSITSQISQPTLDELEKFGKSGDDASGDMASLSSLFANRKKGHFVKGD
AVVVVQGDLINLKGRVEKVEEDNVHIRANIAGLPETLCLKERELCKYFEPGDHVKVVTGA
HEGATGMVIKTEGHNIIIISDTTKEDIKVFSDHVVASSEVTSGLTKLGNYELHDLVLLDD
KNFGVIIRVESEAFHVLKGIPDRAEVVLIRLREIKDKIEKRMNAQDKAMNTVSPKDVVRI
CDGPCRGKQGPVEHIYKGVLFIHDRHHLENAGYICVKSQSCVLVGGSRGGIDMNGKNHVV
SRFNSLRASPNVLQSPRRPPRGPSADFGGGRNRGGRGRPDSLIGTTVKIHKGPYKGYRGR
VKDVHGTSVRVELDSIMKVVSVDRDQISDTAAVATPYRDSHRYGLGSETPMHPSRTPMHP
TMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPGSWGSAASPRYQPGTP
ARPYEAPTPGSGWAPTPAANFAEAGTPRESTSAYANAPSPYLPSTPGGQPMTPSSAAYLP
GTPGGQPMTPGNVGLDMMSPAIGGEGEGQWFLPDILVNVRKSGDDPQIGVVREVLMDGSC
KVSLGASGNREMVTAHPTDLEIIVPKKNDRIKIMSGSQRGVTGKLIGIDGTDGIVKVDDT
LDIKILDMVILAKLAPQ
NT seq 3114 nt   +upstreamnt  +downstreamnt
atggcgaggcgttatgacgacgacgaagaagaggaagagctggaggaggaggaagaagaa
gtagcggaggaggatgatgaggactatgaggagctggatgaggaaggcgacggaaagagg
aaaaggaagtacaggagatctgaattcatcgacgatgttgccgaggaggacgatgatgag
gaagaggaggaggacgaacggccgcgcaagcggaagagccgcccggcgtcgcagttcttc
gacgatatcgcagccgttgccagtgacgacgatgaggaggaggaagaaggggaggaagat
tttatcaatgatgtgggaactgatttgcctgaagaagaaggaagagcaatgcaccgtcgc
ccttttctaccaagggaggatgaacaagatgttgaagatcttgaaagattaattcaggaa
aaatatggtcgttctgctcagtctgaatatgatgaagaaacaacagatgtcgagcagcag
gctctcttaccgtcagtcaaggatccaaaactgtggatggttaaatgcgctattggtcat
gaacgggaggtagctgtttgccttatgcaaaagtatcttgatttacagtctcaaggaaat
gacttgcagataagatcagtgattgccttagatcatcttaaaaattacatctatgtagaa
gctgatagagaagcacatgtcaaggaagcgatcaaagggcttcgtaacatattttccagt
tccaaagtgatgcttgttccaataaaagaaatgaccgatgtactttctgttgaaagtaaa
tctgttgagctgtcaaaggacaaatgggtccgtgttaaacttggaacttacaaaggggac
ctagcaaaggttgttgatgtggacaatgtacgccagagagttaccattaagcttttacct
aggattgatttacaggctttggccaacaaattggaaggcaaagaagttgggaagaaaaag
acgtttgttccacctccacgtcgcatcaatatgcgtgaaattagggagatgaactttcct
gttgagcgcaaatgggatccagttactggcttgcatttcgagacagttgacaataatatg
attaaagatggttatctttacaaagttgtatcagttaagtcaattacttctcagatcagc
cagcctactttggatgagctggagaaatttggaaagtctggagatgatgcaagtggtgac
atggctagcttgtctagcttattcgcaaacaggaaaaaaggtcattttgtgaaaggtgat
gcagttgttgttgttcaaggagatttaataaatttgaagggacgggttgagaaagtagag
gaagataatgtccacataagagcaaatatagctggattgccagaaacattatgcctcaag
gagagagagctctgtaagtattttgagcctggtgatcatgtaaaagtggtgacaggtgct
catgaaggggctactggtatggtgatcaaaactgaaggacataatattattatcatatca
gacacaacaaaggaggatataaaagtgttttcagaccatgttgttgcaagctcagaagtg
acttcaggcctcactaaacttggaaattatgagctccatgatcttgttctactagatgac
aaaaactttggtgtgattatacgtgtggaaagtgaagcattccatgttctcaaagggata
ccggaccgggctgaggtagttcttattcgattgagggaaataaaagataaaattgaaaag
cggatgaatgctcaggataaggcaatgaacacagtttctccaaaagatgttgttaggatc
tgtgatggtccatgtcgtgggaagcaaggtccggttgagcatatatataaaggagtcctt
tttatacatgaccgacatcatcttgaaaatgctggttatatttgtgttaagtcccagtcg
tgtgttctagttggcggatcacgtggaggcattgacatgaatgggaaaaatcatgtggtg
agcagatttaatagtctgagagcttctcccaatgtcctgcagtctccaaggaggccacca
agaggaccttctgcagattttggtggtggaagaaaccgaggtgggagagggagacctgac
tccctaataggcaccactgtcaagatccacaaaggtccctataaaggataccgtggacgt
gttaaagatgttcatggaacttccgtgcgggttgaactggactctataatgaaagttgtt
tcagttgaccgtgatcagatttctgataccgcggctgttgcaacaccataccgtgattca
catcgttatggattgggaagtgagacacctatgcatccttcacggacaccaatgcatcca
actatgacacccatgcgggaccccggagcaacacccatacatgatggcatgcggacaccg
atgcgcgaccgtgcttggaatccttatgcaccaatgagtcctgcaagggacaactgggaa
gatggaaatccaggatcttggggaagtgctgctagccctcgctatcagccaggaactcct
gcacgaccttacgaagcaccgactcctggttcaggttgggcgcctactccagctgctaat
tttgctgaagctgggacgccaagagaaagcacctctgcttatgcaaatgcaccaagcccg
tacttgccatccactcctggtgggcagccgatgactcccagttctgcagcatatcttcca
ggcactcctggtggacagccaatgacacctggaaacgttggattggatatgatgtctcct
gcaataggtggagaaggagaaggacagtggtttttgcctgacatattagtaaatgttcgg
aaatctggggatgatcctcaaattggagttgtgagggaggtgctcatggacggatcttgc
aaagtttctttaggggcatctggtaacagagagatggtgactgctcatccaacagatcta
gagattattgtgccaaagaagaatgacagaataaagataatgagtggttcacagcgtgga
gtcactggaaagcttattggtattgatggaactgatggaatcgtgaaagtggatgacacg
cttgacatcaagattttggatatggttattcttgccaagttggcgccacagtaa

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