Nymphaea colorata (blue-petal water lily): 116256406
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Entry
116256406 CDS
T07418
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116256406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116256406
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116256406
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
116256406
RNA polymerase I system
116256406
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
116256406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
KOW6_SPT5
DUF4438
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
116256406
NCBI-ProteinID:
XP_031488629
LinkDB
All DBs
Position
6:10261175..10271076
Genome browser
AA seq
1037 aa
AA seq
DB search
MARRYDDDEEEEELEEEEEEVAEEDDEDYEELDEEGDGKRKRKYRRSEFIDDVAEEDDDE
EEEEDERPRKRKSRPASQFFDDIAAVASDDDEEEEEGEEDFINDVGTDLPEEEGRAMHRR
PFLPREDEQDVEDLERLIQEKYGRSAQSEYDEETTDVEQQALLPSVKDPKLWMVKCAIGH
EREVAVCLMQKYLDLQSQGNDLQIRSVIALDHLKNYIYVEADREAHVKEAIKGLRNIFSS
SKVMLVPIKEMTDVLSVESKSVELSKDKWVRVKLGTYKGDLAKVVDVDNVRQRVTIKLLP
RIDLQALANKLEGKEVGKKKTFVPPPRRINMREIREMNFPVERKWDPVTGLHFETVDNNM
IKDGYLYKVVSVKSITSQISQPTLDELEKFGKSGDDASGDMASLSSLFANRKKGHFVKGD
AVVVVQGDLINLKGRVEKVEEDNVHIRANIAGLPETLCLKERELCKYFEPGDHVKVVTGA
HEGATGMVIKTEGHNIIIISDTTKEDIKVFSDHVVASSEVTSGLTKLGNYELHDLVLLDD
KNFGVIIRVESEAFHVLKGIPDRAEVVLIRLREIKDKIEKRMNAQDKAMNTVSPKDVVRI
CDGPCRGKQGPVEHIYKGVLFIHDRHHLENAGYICVKSQSCVLVGGSRGGIDMNGKNHVV
SRFNSLRASPNVLQSPRRPPRGPSADFGGGRNRGGRGRPDSLIGTTVKIHKGPYKGYRGR
VKDVHGTSVRVELDSIMKVVSVDRDQISDTAAVATPYRDSHRYGLGSETPMHPSRTPMHP
TMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPGSWGSAASPRYQPGTP
ARPYEAPTPGSGWAPTPAANFAEAGTPRESTSAYANAPSPYLPSTPGGQPMTPSSAAYLP
GTPGGQPMTPGNVGLDMMSPAIGGEGEGQWFLPDILVNVRKSGDDPQIGVVREVLMDGSC
KVSLGASGNREMVTAHPTDLEIIVPKKNDRIKIMSGSQRGVTGKLIGIDGTDGIVKVDDT
LDIKILDMVILAKLAPQ
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggcgttatgacgacgacgaagaagaggaagagctggaggaggaggaagaagaa
gtagcggaggaggatgatgaggactatgaggagctggatgaggaaggcgacggaaagagg
aaaaggaagtacaggagatctgaattcatcgacgatgttgccgaggaggacgatgatgag
gaagaggaggaggacgaacggccgcgcaagcggaagagccgcccggcgtcgcagttcttc
gacgatatcgcagccgttgccagtgacgacgatgaggaggaggaagaaggggaggaagat
tttatcaatgatgtgggaactgatttgcctgaagaagaaggaagagcaatgcaccgtcgc
ccttttctaccaagggaggatgaacaagatgttgaagatcttgaaagattaattcaggaa
aaatatggtcgttctgctcagtctgaatatgatgaagaaacaacagatgtcgagcagcag
gctctcttaccgtcagtcaaggatccaaaactgtggatggttaaatgcgctattggtcat
gaacgggaggtagctgtttgccttatgcaaaagtatcttgatttacagtctcaaggaaat
gacttgcagataagatcagtgattgccttagatcatcttaaaaattacatctatgtagaa
gctgatagagaagcacatgtcaaggaagcgatcaaagggcttcgtaacatattttccagt
tccaaagtgatgcttgttccaataaaagaaatgaccgatgtactttctgttgaaagtaaa
tctgttgagctgtcaaaggacaaatgggtccgtgttaaacttggaacttacaaaggggac
ctagcaaaggttgttgatgtggacaatgtacgccagagagttaccattaagcttttacct
aggattgatttacaggctttggccaacaaattggaaggcaaagaagttgggaagaaaaag
acgtttgttccacctccacgtcgcatcaatatgcgtgaaattagggagatgaactttcct
gttgagcgcaaatgggatccagttactggcttgcatttcgagacagttgacaataatatg
attaaagatggttatctttacaaagttgtatcagttaagtcaattacttctcagatcagc
cagcctactttggatgagctggagaaatttggaaagtctggagatgatgcaagtggtgac
atggctagcttgtctagcttattcgcaaacaggaaaaaaggtcattttgtgaaaggtgat
gcagttgttgttgttcaaggagatttaataaatttgaagggacgggttgagaaagtagag
gaagataatgtccacataagagcaaatatagctggattgccagaaacattatgcctcaag
gagagagagctctgtaagtattttgagcctggtgatcatgtaaaagtggtgacaggtgct
catgaaggggctactggtatggtgatcaaaactgaaggacataatattattatcatatca
gacacaacaaaggaggatataaaagtgttttcagaccatgttgttgcaagctcagaagtg
acttcaggcctcactaaacttggaaattatgagctccatgatcttgttctactagatgac
aaaaactttggtgtgattatacgtgtggaaagtgaagcattccatgttctcaaagggata
ccggaccgggctgaggtagttcttattcgattgagggaaataaaagataaaattgaaaag
cggatgaatgctcaggataaggcaatgaacacagtttctccaaaagatgttgttaggatc
tgtgatggtccatgtcgtgggaagcaaggtccggttgagcatatatataaaggagtcctt
tttatacatgaccgacatcatcttgaaaatgctggttatatttgtgttaagtcccagtcg
tgtgttctagttggcggatcacgtggaggcattgacatgaatgggaaaaatcatgtggtg
agcagatttaatagtctgagagcttctcccaatgtcctgcagtctccaaggaggccacca
agaggaccttctgcagattttggtggtggaagaaaccgaggtgggagagggagacctgac
tccctaataggcaccactgtcaagatccacaaaggtccctataaaggataccgtggacgt
gttaaagatgttcatggaacttccgtgcgggttgaactggactctataatgaaagttgtt
tcagttgaccgtgatcagatttctgataccgcggctgttgcaacaccataccgtgattca
catcgttatggattgggaagtgagacacctatgcatccttcacggacaccaatgcatcca
actatgacacccatgcgggaccccggagcaacacccatacatgatggcatgcggacaccg
atgcgcgaccgtgcttggaatccttatgcaccaatgagtcctgcaagggacaactgggaa
gatggaaatccaggatcttggggaagtgctgctagccctcgctatcagccaggaactcct
gcacgaccttacgaagcaccgactcctggttcaggttgggcgcctactccagctgctaat
tttgctgaagctgggacgccaagagaaagcacctctgcttatgcaaatgcaccaagcccg
tacttgccatccactcctggtgggcagccgatgactcccagttctgcagcatatcttcca
ggcactcctggtggacagccaatgacacctggaaacgttggattggatatgatgtctcct
gcaataggtggagaaggagaaggacagtggtttttgcctgacatattagtaaatgttcgg
aaatctggggatgatcctcaaattggagttgtgagggaggtgctcatggacggatcttgc
aaagtttctttaggggcatctggtaacagagagatggtgactgctcatccaacagatcta
gagattattgtgccaaagaagaatgacagaataaagataatgagtggttcacagcgtgga
gtcactggaaagcttattggtattgatggaactgatggaatcgtgaaagtggatgacacg
cttgacatcaagattttggatatggttattcttgccaagttggcgccacagtaa
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integrated database retrieval system