Candidatus Nitrosomarinus catalina: NMSP_1294
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Entry
NMSP_1294 CDS
T04846
Name
(GenBank) Exosome complex component Rrp42
KO
K12589
exosome complex component RRP42
Organism
nct
Candidatus Nitrosomarinus catalina
Pathway
nct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMSP_1294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nct03019
]
NMSP_1294
Messenger RNA biogenesis [BR:
nct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NMSP_1294
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NMSP_1294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ARS64908
UniProt:
A0A2Z2HLP3
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All DBs
Position
complement(1019369..1020187)
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AA seq
272 aa
AA seq
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MTSVSVIDELKRAQILELLEQGKRVDGRALDEPRKICIEIDAIPKANGSARVYLGDTQVL
CGVKIQPDKPFPDVGDKGMFMCTAELLPLSHPTVETGPPQAPVIELARVVDRGIRESHMV
DVSDLVIEKDKSVVGVFADVVAIDYDGNLFDACSYAATAALLTSKTPTWEMVDDQPSVVE
GADKPLPITTIPVSVTMGKIGNYIVVDPNGDEWESMDSRITITTDSDGNIVALQKGGSDG
FTQEEINQCGDLSIKVGAKIREQLKSSKQEGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgtttcagttattgatgaactaaaaagagcacaaattctagaattattagaa
caaggaaaaagagttgatggaagagcactagatgaaccaagaaaaatatgcatcgaaatt
gacgcaattcctaaagcaaacggttctgcaagagtttatcttggtgatactcaagttttg
tgtggtgtaaaaatccaaccagacaaacctttcccagatgtaggtgacaagggtatgttt
atgtgcactgctgaattattgcctctttcacatcctactgttgaaactggacctccacaa
gcacctgtcattgaattggcaagagttgttgataggggaattcgagaaagtcatatggtt
gatgtttctgatttagtaattgaaaaggacaaatctgtagttggtgtatttgcagatgtt
gtggcaattgattatgacggaaatctttttgatgcatgctcttatgctgcaactgctgct
ttacttacatcaaaaactccaacatgggagatggttgatgaccaaccttcagttgttgag
ggtgcagacaaaccgttacctataaccacaattcctgtatctgtaaccatgggaaaaatt
ggaaattacattgttgttgatcctaatggcgatgaatgggaaagtatggattcaagaatt
actataactacagattctgatggaaatattgttgcacttcaaaaaggtggcagcgatgga
tttacacaagaagaaatcaatcaatgtggagatttatcaattaaagtaggagcaaaaata
agggaacaattaaaatcctcaaaacaggagggtcaataa
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