Neptunomonas concharum: F0U83_16575
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Entry
F0U83_16575 CDS
T06194
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ncu
Neptunomonas concharum
Pathway
ncu03420
Nucleotide excision repair
ncu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0U83_16575 (uvrD)
03430 Mismatch repair
F0U83_16575 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncu03400
]
F0U83_16575 (uvrD)
Enzymes [BR:
ncu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0U83_16575 (uvrD)
DNA repair and recombination proteins [BR:
ncu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0U83_16575 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
F0U83_16575 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
AAA_22
DUF2937
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
QEQ98195
UniProt:
A0A5P1RG16
LinkDB
All DBs
Position
3487501..3489708
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AA seq
735 aa
AA seq
DB search
MDVTAIIDGLNDAQRAAVTAPVQNLLVLAGAGSGKTRVLVHRIGWLVQTEGMSPYSIMAV
TFTNKAAREMRGRIEELLGVNPHGMWVGTFHGLAHRLLRAHWRDAGLNENFQIMDSEDQL
RLIKRLCKEMNLDENRWPARQFQWYINAQKDEGLRSRHIERTGDPYDKMMIGMYEAYEDA
CDRGGMIDFGELLLRCLELLRDHNPTLLRHYQERFRYILVDEFQDTNAIQYAWLRLMTGN
DRKLMAVGDDDQSIYGWRGARIENIQNLPEHFPGAEVIRLEQNYRSTQTILEAANAVIAN
NRGRLGKQLWTEGKDGEKISLYSAFNEQDEARFIVGQIQKWVENGSLRAESAILYRSNAQ
SRVLEEALIRSGVPYRIYGGHRFYDRLEIKNALAYLRLVSNRDDDTAMERIINVPTRGIG
TRTIEVVREQARTENIPMWRAANEVVEYKKLPARALSALQAFLDIINRIDTESTGTSLHE
LTDHAIQLSGLIEHHKKEKGDKAQSRLENLEELINAAKQFTSQWEATAEEENVTELSAFL
DQAALDAGEAQADDHQDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHSMSAEEPGRMEEE
RRLCYVGITRAMQKLFLTYAEARRMHGQDNYNRPSRFIQEIPLELVEEVRLNATVSRPMT
ARNDYSNSSNGLFNNVQQDDGTPPIYIGQRVCHPIFGEGIVLNCEGNGPKARVQVNFDSE
GMKWLVLGFAKLEPA
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggacgttacagcaatcattgatggtttaaacgacgcgcaacgggctgctgtaacagca
cctgtacaaaacctcttagtattggccggtgcaggttcaggtaaaacccgcgtattggtg
catcgcatcggttggttagtacaaaccgagggtatgtcaccttattccattatggcggta
acgttcaccaacaaggccgctagagaaatgcgtggtcgtattgaagagctacttggcgtt
aacccacacggcatgtgggtcggcacctttcacgggcttgctcatcgcttgttacgtgct
cattggcgtgacgcagggcttaatgagaacttccagattatggatagcgaagaccagcta
cgcctgatcaagcgactctgcaaagagatgaatctggacgagaaccgttggcctgctcgt
cagtttcagtggtacatcaatgcacagaaagatgaagggctgcgcagccgacatatcgag
cgaaccggcgacccctacgataagatgatgatcggcatgtatgaggcctatgaagacgcc
tgtgatcgtggcggcatgatcgattttggcgagcttctacttcgttgccttgagcttttg
agagatcataatccaacattgcttcgtcactaccaggaacgttttcgctacatccttgta
gatgagttccaagataccaatgctattcagtacgcatggctacgtttaatgacgggcaat
gatcgtaaactgatggcggttggcgacgacgatcagtccatttatggctggcgtggcgcc
cgcattgaaaatatccaaaatttaccggagcacttccctggtgccgaggttattcgatta
gaacaaaactaccgctccactcaaacgattttggaagcggccaacgcggttatcgcaaac
aatcgcggacgcttgggcaaacaactctggaccgagggtaaagatggcgaaaaaatatcc
ctctactcagccttcaatgagcaagatgaagcccgctttattgtcgggcaaattcagaaa
tgggtagagaacgggagtcttcgcgcagagtcagctattctttaccgctccaatgcccaa
tcacgggtcttagaggaagcgctgatccgcagtggcgtgccttaccgcatttatggcggc
catcgtttctatgatcgccttgaaatcaagaacgcacttgcctatttacgattggtttct
aaccgcgatgatgataccgctatggaacgtattattaatgttcctactcgcggtattggc
acgcgaacgattgaagttgttcgcgaacaagccagaacagaaaatatccccatgtggcgc
gccgccaatgaagtggtagagtacaaaaaactacccgcacgtgcgctttctgcactgcag
gcgtttttagatattatcaatcggatcgataccgaatccacgggcacctcgttacacgaa
ctgacagaccatgcgattcaacttagcgggctaatcgagcaccacaagaaagagaaaggc
gacaaagctcagtcccgcctagaaaacttggaagaactgatcaacgccgccaaacagttt
actagtcagtgggaagccacggcagaagaggaaaatgttactgaactctccgcattcctt
gatcaggcagcccttgatgctggcgaagcgcaagctgatgatcatcaagacagcgtccag
ctgatgaccttacactcagccaaagggctggagttccctttggtctttttggccggaatg
gaagagggactattcccccacagcatgtcggcagaagagccggggcgtatggaagaggag
cgccgtctttgctacgtaggcatcactcgcgccatgcaaaagctgtttcttacctatgcc
gaagcacgccgtatgcatggccaagataactacaaccgtccatcgcgctttatccaagag
atacctctggaattagtggaagaggttcgtcttaacgcaacggtgagtcgaccaatgacc
gcacgcaatgactatagcaactcgtctaacggtttattcaataacgtgcagcaggacgat
ggcactccacctatctatatcgggcagcgagtgtgccacccgatcttcggtgaaggcatc
gtattaaactgcgaaggcaacggcccaaaggctcgcgtgcaagtcaactttgacagcgaa
ggtatgaaatggctggtgctgggctttgctaaactagaacccgcttag
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