Nonomuraea coxensis: Nocox_00090
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Entry
Nocox_00090 CDS
T07466
Symbol
rpoB1
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ncx
Nonomuraea coxensis
Pathway
ncx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nocox_00090 (rpoB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncx03021
]
Nocox_00090 (rpoB1)
03400 DNA repair and recombination proteins [BR:
ncx03400
]
Nocox_00090 (rpoB1)
Enzymes [BR:
ncx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nocox_00090 (rpoB1)
Transcription machinery [BR:
ncx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Nocox_00090 (rpoB1)
DNA repair and recombination proteins [BR:
ncx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Nocox_00090 (rpoB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QYC37657
UniProt:
A0ABX8TQ85
LinkDB
All DBs
Position
complement(19483..22950)
Genome browser
AA seq
1155 aa
AA seq
DB search
MAASRNASAVPAGPRRVSFARIQEPLEVPDLLALQTESFDWLLGNDKWKARVEAARQAGR
RDVPTQSGLEEIFEEISPIEDFSGTMSLSFRDHRFEPPKYSVDECKDKDMTYSAPMFVTA
EFINNTTGEIKSQTVFMGDFPLMTPKGTFIINGTERVVVSQLVRSPGVYFERTVDKTSDK
DLYGCKVIPSRGAWLEFEIDKRDSVGVRIDRKRKQAVTVLLKALGWTNDQILERFGQYES
MRATLEKDHTAGQDDALLDIYRKLRPGEPPTKESAQTLLENLYFNAKRYDLAKVGRYKIN
KKLGVDAEITQGTLTEEDIVATIEYIVRLHAGEESMPGANGEVIVEIDDIDHFGNRRIRN
VGELIQNQVRLGLGRMERVVRERMTTQDVEAITPQTLINIRPVVASMKEFFGTSQLSQFM
DQTNPLTGLTHRRRLSAVGPGGLSKERAGVEMRDVHPSHYGRMCPIETPEGPSIGLIGYL
ACFARLNAFGFVETPYRKVVDGRVTDQIDYLTADEEDKYVIAQANSPLSPDGGFAEPRVM
VRTKGGETEFVRGHDVHYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQSVPLLR
SEAPFVGTGMEYRAATDTGDLVLAAKPGVVEEVCADYVTVRNDDGTGTTYRLATFKHSNQ
GTSFNQKPIVAEGDRVEARQVLADGPSTDGGELALGKNLLVAFMPWEGFNYEDAIVLSQR
LVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDDRGIIRIGADVVTGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREEGDE
LPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIILNPL
GVPGRMNVGQVLETHLGWIAARGWDISGVEEAWAERLRDKGFGQVEPRTNVATPVFDGAH
EEQIIGLLENTVPNRDGERLVGRNGKAMLFDGRSGEPFPYPIAVGYIYILKLHHLVDDKI
HARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHALQEQLTIKSDDVVGRVK
VYEAIVKGENVPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDADEDIFRAAEEL
GIDLSRREPSSVEEV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcctcgcgcaacgcctccgccgtacccgctggtccccgtcgcgtgtctttcgcg
cgtatccaggagccgctcgaagttcctgaccttctggccctgcagaccgagtctttcgac
tggctgctcggcaacgacaagtggaaggcccgggtagaggcggctcgtcaggccgggcgc
agggacgtcccgacccagtcgggcctcgaagagatcttcgaagagatcagtccgatcgag
gacttctcggggaccatgtccttgtcgttccgcgatcaccggttcgagccgccgaagtac
tccgtagacgagtgcaaagacaaggacatgacctactccgccccgatgttcgtcacggcg
gagttcatcaataacaccaccggtgagatcaagagccagacggtgttcatgggggatttc
ccgctcatgacgccgaagggcacgttcatcatcaacggcaccgagcgtgtcgtggtctcg
cagctggtccgttcacctggcgtgtacttcgagcgcacggtggacaagacctccgacaag
gatctgtacgggtgcaaggtgatcccgtcgcggggggcctggctggagttcgagatcgac
aagcgtgacagtgtcggggtgcgcatcgatcgtaagcgcaagcaggccgtgacggtgctg
ttgaaggcgctgggctggacgaacgaccagattctggagcggttcggtcagtacgagtcg
atgcgggcgacgctggagaaggatcatacggcgggtcaggatgacgcgctgctggacatc
taccgcaagctgcggccgggtgagccgccgaccaaggagtcggcgcagacgttgctggag
aatctgtacttcaacgccaagcggtacgacctggcgaaggtgggccgctacaagatcaac
aagaagctcggggtggatgcggagatcacgcagggcaccctgaccgaagaggacatcgtc
gccacgatcgagtacatcgtccggctgcacgcgggcgaggagtcgatgccgggcgccaac
ggtgaggtgatcgtcgagatcgacgacatcgaccacttcggcaaccggcggatcaggaac
gtgggcgagctgatccagaaccaggtccggctgggcctgggccgcatggagcgggtggtc
cgcgagcggatgacgacccaggacgtcgaggcgatcacgccgcagaccctgatcaacatc
cgcccggtcgtggcgtccatgaaggagttcttcggcacctcgcagctgtcgcagttcatg
gaccagaccaatcccctgaccgggctgacgcaccgccggcgcctgtccgccgtggggccg
ggcggcctgtccaaggagcgggcgggcgtcgagatgcgggacgtgcacccgtcccactac
ggccgcatgtgcccgatcgagacccccgagggcccgagcatcggcctcatcggctacctc
gcctgtttcgcccggctcaacgccttcggcttcgtcgagacgccgtaccgcaaggtcgtg
gacggccgggtcaccgaccagatcgactacctgaccgccgacgaggaggacaagtacgtc
atcgcccaggcgaactcccctctctcgcccgacggcggcttcgccgagccacgggtgatg
gtccgcaccaagggcggtgagaccgagttcgtccgcggccacgacgtgcactacatggac
gtctcgccgcgccagatggtgtcggtggcgacggcgatgatcccgttcctggagcacgac
gacgccaaccgcgcgctcatgggcgccaacatgatgcgccagtccgtccccctgctgcgg
agcgaggcgccgttcgtcggcaccggcatggagtaccgcgccgccaccgacacgggcgac
ctggtgctcgccgcgaagcccggcgtggtcgaggaggtctgcgccgactacgtcacggtc
aggaacgacgacggcaccggcacgacgtaccggctggcgacgttcaagcactccaaccag
gggacgagcttcaaccagaagcccatcgtcgccgagggcgaccgggtggaggcccgccag
gtcctcgccgacggcccctccacggacgggggcgagctggcgctgggcaagaacctgctg
gtggcgttcatgccgtgggaaggcttcaactacgaggacgccatcgtgctgtcccagcgc
ctggtgcaggacgacgtgctgtcgtcgatccacatcgaggagcacgaggtcgacgcccgc
gacaccaagctgggccccgaggagatcacccgggacatcccgaacgtctccgaggaggtg
ctggccgacctcgacgaccgtggcatcatccgcatcggcgccgacgtggtgaccggcgac
atcctggtcggcaaggtcaccccgaagggcgagaccgagctgaccccggaggagcggctg
ctgcgcgcgatcttcggcgagaaggcccgcgaggtgcgcgacacctcgctgaaggtgccg
cacggcgagtccggcaaggtcatcggcgtccgggtgttctcccgcgaggagggcgacgag
cttcctccgggcgtcaacgagctggtccgcgtctacgtcgcgcagaagcgcaagatcacc
gacggcgacaagctggccggccggcacggcaacaagggcgtcatctccaagatcctgccg
gtcgaggacatgccgttcctggaggacggcaccccggtcgacatcatcctcaacccgctg
ggcgtccccggccgcatgaacgtcggccaggtactggagacccacctcgggtggatcgcc
gcccgcggctgggacatctcgggcgtcgaggaggcgtgggccgagcggctgcgcgacaag
ggcttcggccaggtcgagccgcgcaccaacgtcgccaccccggtcttcgacggcgcgcac
gaggagcagatcatcggcctcctcgagaacaccgtccccaaccgcgacggcgaacgcctg
gtcgggcggaacggcaaggccatgctcttcgacggccgcagcggcgagccgttcccctac
cccatcgccgtcggctacatctacatcctcaagctgcaccacctggtcgacgacaagatc
cacgcccgctcgaccggcccctactccatgatcacccagcagccgctcggcggtaaggcc
cagttcggcggccagcgcttcggcgagatggaggtgtgggcgctggaggcgtacggcgcg
gcccacgcgctccaggagcagctcacgatcaagtccgacgacgtcgtcggccgggtcaag
gtctacgaggccatcgtcaagggcgagaacgtccccgagcccggcatcccggagtccttc
aaggtcctcatcaaggagatgcagtcgctgtgcctcaacgtcgaggtgctctccagcgac
ggcatgtccatcgagatgcgcgacgccgacgaggacatcttccgcgccgccgaagagctc
ggcatcgacctgtcccggcgcgagccgagcagcgtggaggaggtctga
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