Nitrospira defluvii: NIDE1303
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Entry
NIDE1303 CDS
T01281
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nde
Nitrospira defluvii
Pathway
nde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIDE1303 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nde03021
]
NIDE1303 (rpoB)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE1303 (rpoB)
Enzymes [BR:
nde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIDE1303 (rpoB)
Transcription machinery [BR:
nde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIDE1303 (rpoB)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIDE1303 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7616
Motif
Other DBs
NCBI-ProteinID:
CBK41053
UniProt:
D8PCU4
LinkDB
All DBs
Position
1257105..1261064
Genome browser
AA seq
1319 aa
AA seq
DB search
MSESTLSEFVERKDFSRIRTSIDIPDLIEIQKRSYEEFLQMEVEPDRRKDQGLQAALASV
FPITDYNNTAALEFSNYSLGTPKYDERECLEQGMTFAVPLKLRVRLIVFDKEDKGPKKKV
LDVREQEVYVGELPLMTERGTFLINGTERVVVSQLHRSPGASFTHDKGRTHASGKVLYSA
RIIPYRGSWLDFEFDARDILYVRIDRRRKMPATILLKAFGYSTDDLLRMYYPVEEIRVSK
GKLYRKLDPEIHHGLKCSTEVMEKGGKDPLVREGAKLTKVLIAKLKAAGIKEIPVTPAEL
VGRAVLTELVDSGKKQSLAEKNQRLTEEILEKILDSDIEEFKVIYLDTTNATLVILDTLD
MERTGSKEEAMVEIYRRLRPGETPSVETARALFDNLFLSPKRYDLSPVGRLKLNKKLGLD
FALEQRTLTAQDIVEVVRYLVNLKIGRGEIDDIDHLGNRRVRSVGELLENQFRLGLVRME
RSIKERMNLLDMETVLPHDLINAKPVVAAVKEFFSSSQLSQFMDQTNPLAEITHKRRLSA
LGPGGLTRERAGFEVRDVHPSHYSRICPIETPEGPNIGLITSLATYARINEFGFIEAPYR
KVVKGRVSDELEYLSAIEGDKYIIAQANSKVDTSGRLVSETVSARSAGDFITATPDKIEY
MDVSPKQVVSVATALVPFLEHDDANRALMGSNMQRQAVPLLKAESPLVGTGMEAVVARDS
GYVVQAKREGVVESVDATRIVVRADAKEGRKRNDSGLDVYEMIKFQRSNQNTCITQTPVV
RIGEPVKRGQVLADGPAIDHGELALGKNVLVAFMPWGGYNFEDAILLSEKLVREDAFTSI
HIEEFEVEARDTKLGKEDITRDIPNVGEEALRDLDESGIIRIGAEVKPGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKAGDVKDTSLTVPPGVEGIVVDVKIFSRKGLDKDERSKSIESE
DHMKLQRDHQEELRIIEDEKTKKVRKLLLGKVVGRDLMDPETGGVILKKKGKLTAEILKR
LPDDMVRHIILSDPDEQKELEDVERRAKEQIEILQTLYDEKVGRLRRGDELPPGVIKLVK
VYIAMKRKIQVGDKMAGRHGNKGVVSRVLPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQ
ILETHLGWAARALGIKVASPVFDGASEKEIKELLKKAKLSPSGQTMLMDGRTGESFSSPV
TVGYMYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAAS
ILQEFLTVKSDDVPGRSRMYEAIVKGEPFLEPGLPESFNVLVKELQSLGLDVELVKSKD
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatcgactctttcggagtttgtcgaacgtaaggatttttctcggattcgtacg
agcatcgatattcccgatctcatcgaaatccagaagcggtcctacgaagagttcctccaa
atggaagtcgagccggaccgtcgcaaagatcagggtttgcaggcggcattagccagcgtc
tttcccattacggactacaacaacacggcggccttggagttctccaactattcgttggga
actccgaagtacgacgaacgggagtgccttgagcagggcatgacgtttgccgttcccttg
aagttgcgtgtgcggttgattgtcttcgataaagaggacaaggggccgaagaagaaggtg
ctagacgttcgggagcaggaggtctatgtcggcgaacttccgctcatgaccgagcgcggt
acgttccttatcaacgggaccgagcgagtggtggtcagccagttgcaccgctcgccgggc
gcgtcgttcacgcacgataaggggcggacccatgccagcggcaaggtgttgtattctgcc
cggattattccctatcgcggatcctggctcgatttcgagttcgacgcacgggacattctt
tacgttcgcatcgatcgccgtcgtaaaatgcctgcgacgatcctgttgaaggcgttcggg
tatagcaccgacgacttattgcggatgtattaccccgtggaggagattcgtgtttccaag
ggaaagctctaccggaagctcgatcctgaaatccatcacgggttgaagtgttcgacggaa
gtgatggagaagggcggcaaagacccgctcgttcgcgaaggcgcgaagctgacgaaagtc
ttgatcgccaagctgaaggcggcgggcatcaaggaaattcccgtcaccccagccgagttg
gtgggacgtgcggtcctgacggagttggtcgacagcggcaagaagcagtcgctggccgag
aagaaccagcgtctgaccgaagagattctggagaagatccttgatagcgatatcgaggaa
ttcaaggtcatttatcttgatacgaccaatgccacgctggtcatcctcgatacgctcgac
atggagcgcacaggatcgaaggaagaggcgatggtcgaaatctatcgccgcctcaggccg
ggtgagacaccgtctgtcgaaactgccagagccctgttcgataatttgtttttaagcccc
aagcgatacgatctgtcgcccgtcggacggctcaagctcaacaagaagctgggcctcgat
ttcgcgctcgaacaacggaccttgacggcgcaggatatcgtggaggtggtgcgatatttg
gtgaacctcaagatcggtcgcggcgagatcgacgacatcgaccacttgggcaaccggcgt
gtccggtcggtcggtgaactgttggagaaccagttccggttgggtctcgtgcgtatggag
cgaagcattaaagagcgcatgaatctgctggatatggagaccgtattgccgcatgacctg
atcaacgccaagcccgtggtggcggcggtgaaggaatttttcagcagcagtcagctctcc
cagttcatggaccaaacgaatccccttgccgagattacgcacaagcgccggctgtcagct
cttggccccggcggtttgactcgcgagcgcgcaggtttcgaagtgcgcgacgtgcatcca
tctcactacagccgcatttgtccgattgagacgccggaaggtccgaacatcggcttgatt
acgtcactcgcaacctacgcgcggatcaacgaatttggatttatcgaggcgccgtatcgg
aaggtcgtgaaggggcgcgtcagtgacgaactggaatatctttcggcgattgagggagac
aagtacatcattgcccaggcgaattcgaaagttgatacgtcgggtcgcctcgtgtccgag
acggtgtcggcacgctcagccggggactttatcaccgcgacccccgacaagatcgaatat
atggacgtgtccccgaagcaggtcgtcagcgtcgcgacggcgctggtaccgtttcttgag
catgacgacgcaaaccgcgccttgatgggatcgaacatgcagcgccaggcggtgccgctg
ttgaaggctgagtcgccgctggtcggcaccggcatggaagccgtagttgcgcgtgactca
ggttatgttgtccaggccaagcgtgaaggtgtcgtggaaagtgtcgatgccacccgaatt
gtggtgcgggctgatgccaaagagggccgcaagcgcaacgattccggccttgatgtgtat
gagatgatcaagttccagcgctcgaaccagaatacctgtatcactcagactcccgtggtt
cggatcggtgagccggtcaagagggggcaggtgctggccgatggtcccgctatcgatcat
ggagagctcgcactcggaaagaatgtgctcgtcgcgtttatgccgtggggtggatacaac
ttcgaagacgcgattttgttgagtgaaaagctggtgcgggaagatgccttcacgtccatt
catatcgaggagtttgaagtcgaagcccgcgataccaaattgggtaaggaagatattacc
cgcgacattccgaatgtcggcgaagaagcgcttcgtgaccttgatgagagcggaatcatc
cgaatcggcgccgaggtcaagcctggcgacattctcgtcgggaaggtgactccgaagggc
gagacccaactgacgccggaagagaagctgttgcgtgcaattttcggtgagaaggccgga
gacgtcaaggatacgtctctcacggtgccgcccggcgtggaaggcatcgtcgtcgatgtg
aagatcttctcccgcaaaggcttggataaggatgaacgctccaagagtatcgagagcgaa
gatcatatgaagctgcagcgcgaccaccaggaagagctgcggatcattgaagatgaaaag
accaagaaggtccgcaagctgctgctcggtaaagtggtcggacgggacctgatggatcca
gaaacgggcggtgtcattctgaagaagaagggcaagctcactgcggaaattttgaagcgg
cttccggacgacatggtgcggcacattattctcagcgatccggatgagcagaaggagctg
gaggatgtcgagcgccgcgccaaggagcagattgaaatcctgcagaccctgtacgacgaa
aaagttggccgattaagacggggcgatgaacttccgcccggtgtgatcaagttggtcaag
gtctacatcgcaatgaagcggaagatccaggtcggcgacaaaatggcgggacgtcacggg
aataagggtgtcgtttcacgcgtgctgccggaagaggatatgccctatttgccggacgga
actccggtggaaatcgttctgaatccgttgggcgtaccgtcccgtatgaacgttggacaa
atcctggagacgcacttggggtgggctgccagagcgttggggatcaaggtggcgagcccc
gtattcgacggggcttctgagaaagagatcaaggaactgctcaagaaggcgaagttgtct
ccaagtggtcaaacgatgttgatggacgggcgtaccggtgaatccttcagcagccccgtc
acggtcggatatatgtatgtcttgaagctccaccacctggtggacgataaaattcacgct
cggtccatcggtccatactcccttgtgacgcaacagccacttggaggaaaggcgcagttc
ggtggtcaacgtttgggagagatggaagtgtgggcgcttcaggcctacggggccgcgtcc
attctccaggaattcctgactgtgaaatccgacgacgtgccgggccggtcccgcatgtac
gaggcaattgtgaagggcgaaccgttcctggagcctggattgccggaatcgttcaacgtg
ttagtcaaagagctgcaaagtcttgggctcgatgtcgagctggttaaatcaaaggactga
DBGET
integrated database retrieval system
