Nocardioides dokdonensis: I601_0722
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Entry
I601_0722 CDS
T04431
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I601_0722 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndk03021
]
I601_0722 (rpoC)
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_0722 (rpoC)
Enzymes [BR:
ndk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I601_0722 (rpoC)
Transcription machinery [BR:
ndk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I601_0722 (rpoC)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I601_0722 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANH37172
UniProt:
A0A1A9GHQ4
LinkDB
All DBs
Position
complement(740427..744308)
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEGKIGLERERLEKRRDQSLEDRTKKLEED
LAALEAEGAKADQRRKVRDGAEREMKQLRDRAQREIDRLDEVWNTFKSLKVQDLTGDEML
YREMKAWFGKYFEGHMGAAAIQQRLRDFDIAAEVESLRDTIANGKGQKKVRALKRLKVVD
AFRKTGNEPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPSQDMIIGLFWLTTDRDGEVGEGR
AFSSVAEAIMAFDRSEITLQSKVKIRLDDVVPGSGAEFNESGPKAETTTVETTLGRALFN
ETLPADYPFVNYEVGKKQLGAIVNDLAERYTKVEVAASLDALKDAGFSFATFSGVTVSID
DVTTPADKLEILAPYEAQAAKVQKDFERGLMTDDERRQELVEIWTDASRKVGDAMEKAFD
RTNPIYMMVDSGASGNMNQIRQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIGERREDGTVVKAE
NAETAAYARAAATEVTHPETGETLAAAGEDLGDVKIDELVAAGIEEVKVRSVLTCDAKTG
TCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRV
VELFEARSPKGRTPIAEAAGRVEIDETDKARKILVTPDDGSEVQEYPVSKRSRLNVDDGQ
HIEVGHHLTSGTPDPQDVLRILGVRRAQEHLVDEVQQVYRSQGVSIHDKHIEIIVRQMLR
RVTVIESGETNLLPSDLVDRVRFEEENRRVVSEGGKPASGRPVLMGITKASLATESWLSA
ASFQETTRVLTDAAIHGRSDSLRGLKENVIIGKLIPAGTGLERYRAIRVEPTEEARAAAY
SVTGYDSYDYEFGGNAGGQAVALDDFDFGSYQS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgttaacttcttcgaccagcttcagatcggtctcgccaccgcggacgacatc
cgcacgtggagccacggcgaggtcaagaagccggaaaccatcaactaccgcacactcaag
ccggagcgcgacggtctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggtccgccgcgagcggatgggccacatcgagctcgccgccccg
gtgacgcacatctggtacttcaagggcgtgcccagccgtctgggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctccgtcgac
gaggacgctcgccaccgcgacctgtcctcgctcgagggcaagatcggcctggagcgcgag
cgcctcgagaagcgtcgcgaccagtcgctggaggaccgcaccaagaagctggaggaggac
ctcgccgccctcgaggccgagggtgccaaggccgaccagcgtcgcaaggtgcgcgacggc
gccgagcgggagatgaagcagttgcgcgaccgagcgcagcgcgagatcgaccgcctcgac
gaggtctggaacacgttcaagtccctgaaggtccaggacctgaccggcgacgagatgctc
taccgcgagatgaaggcctggttcggcaagtacttcgagggccacatgggcgccgccgcg
atccagcagcgcctgcgggacttcgacatcgccgccgaggtcgagtcgctgcgcgacacc
atcgccaacggcaagggccagaagaaggtccgcgccctcaagcgcctcaaggtcgtcgac
gccttccgcaagaccggcaacgagccccgcggcatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgtcccatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcggctgctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgtcgtggtcgcccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcgcttccgtcagaacctgctgggcaag
cgcgtggactactcgggccgttcggtcatcgtgtcgggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctcttcaagcccttcgtcatgaagcgcctg
gtcgacctgtcgcacgcgcagaacatcaagtccgccaagcggatggtcgagcgcgctcgt
ccggtcgtgtgggacgtgctcgaagaggtcatcaccgagcacccggtgctgctgaaccgt
gcccccaccctgcaccgcctgggcatccaggccttcgagccccagctcatcgagggcaag
gccatccagatccacccgctcgtgtgcggcgcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcccggatcctgatgctg
tcgacgaacaacatcctcaagccctcggacggccgcccggtcaccatgccgtcgcaggac
atgatcatcggcctgttctggctgaccacggaccgcgacggcgaggtcggcgaaggccgg
gccttctccagcgtggccgaggcgatcatggccttcgaccgctcggagatcaccctgcag
tcgaaggtcaagatccgtctcgacgacgtggtgccgggctccggcgccgagttcaacgag
agcggaccgaaggccgagacgaccaccgtcgagaccaccctgggtcgcgcgctgttcaac
gagaccctgcccgccgactacccgttcgtgaactacgaggtcggcaagaagcagctcggc
gcgatcgtcaacgacctcgcggagcgctacaccaaggtcgaggtcgcggcctcgctcgac
gccctcaaggacgccggcttcagcttcgcgaccttctcgggtgtcaccgtctccatcgac
gacgtcaccacgccggccgacaagctcgagatcctcgcgccctacgaggcccaggccgcg
aaggtgcagaaggacttcgagcgcggtctgatgaccgacgacgagcgccgtcaggagctc
gtggagatctggaccgacgccagccgcaaggtcggcgacgcgatggagaaggcgttcgac
cggaccaaccccatctacatgatggtcgactcgggcgcgtccggaaacatgaaccagatc
cgtcaggtcggcgccatgcgtggtctggtggcgaaccccaagggcgagatcatcccgcgc
ccgatcaaggcgaacttccgtgagggcctctcggtcctggagtacttcatctccacccac
ggtgctcgcaagggtctggccgacaccgccctgcgtaccgccgactcgggctacctgacc
cggcgcctggtcgacgtctcgcaggacgtcatcatccgcgaggacgactgtggcaccgag
cgcggtctgcccaagcggatcggcgagcgtcgtgaggacggcaccgtggtcaaggcggag
aacgccgagaccgcggcgtacgcccgcgcggcggccaccgaggtcacccacccggagacc
ggcgagaccctcgccgccgccggcgaggacctcggcgacgtcaagatcgacgagctcgtg
gcagccggcatcgaggaggtcaaggtccgctccgtgctgacctgcgacgccaagaccggt
acctgcgccaagtgctacggccgttcgctggccaccggcaagctcgtcgacatcggcgag
gcggtcggcatcatcgccgcccagtcgatcggtgagccgggcacgcagctgaccatgcgt
accttccacaccggcggtgtggcctccgcggacgacatcacgcagggtctgccccgcgtg
gtcgagctcttcgaggcacgctcgcccaagggccgcacgccgatcgccgaggcggccggc
cgggtcgagatcgacgagaccgacaaggctcgcaagatcctcgtcacgcccgacgacggc
tcggaggtccaggagtacccggtctccaagcgctcgcgtctcaacgtggacgacggccag
cacatcgaggtgggccaccacctcacgtcgggcaccccggacccgcaggacgtcctgcgg
atcctcggtgtgcgtcgcgcccaggagcacctggtggacgaggtccagcaggtctaccgc
tcgcagggcgtgtcgatccacgacaagcacatcgagatcatcgtgcgccagatgctgcgt
cgcgtcacggtgatcgagtcgggcgagacgaacctgctgccctccgacctcgtggaccgc
gtgcggttcgaggaggagaaccgtcgggtcgtctccgagggcggcaagccggcgtcgggt
cgtccggtgctcatgggcatcaccaaggcctcgctggcgaccgagtcgtggctctcggcg
gcctccttccaggagaccacccgcgtgctcaccgacgcggcgatccacgggcgcagcgac
tcgctgcgcggtctcaaggagaacgtgatcatcggaaagctgatcccggcgggcaccggc
ctcgagcggtaccgcgccatccgggtggagccgaccgaggaggctcgggccgcggcgtac
tccgtcaccggctacgactcctacgactacgagttcggtggcaacgccggcggccaggcc
gtggccctggacgacttcgacttcgggtcgtaccagagctga
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