Nocardiopsis exhalans: NE857_21760
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Entry
NE857_21760 CDS
T08285
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03410
Base excision repair
nex03430
Mismatch repair
nex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NE857_21760
03430 Mismatch repair
NE857_21760
03440 Homologous recombination
NE857_21760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_21760
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NE857_21760
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NE857_21760
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NE857_21760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
USY17945
LinkDB
All DBs
Position
complement(4928876..4930801)
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AA seq
641 aa
AA seq
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MTYTLTIDIDDFAGVTGQGLFATLCARRGWTDEYLATIQSEEHDALKDVETMVAVLEDAR
ASGSKVVIAPDFDMDGIASGILGYAGLSELGFDVELHLPDYRRGHDLCPEDIAEIHAAWP
DTRVLLTCDGGVNSHEGIAAARSLGWTTLVTDHHAELEPGSSADVTVDPCRIDETYALKG
ICGAHVLYQVIEAHAVAHRPDKLWEVRLLRLFAGLGTVSDVMPLLYENRQLVRDSLSLAR
LLWVRPPKTVPNRFGGLDPDLKRIDVDRAVLLQLLRADDHHPVFLAAFEGFALLLKAFTQ
AGKIREVDSIDEGLYGFYLAPAMNSPRRIEAPLAPCFEVFTAPTPEAKLDAARAVIEGNE
HRKELTAAYTEEILGADQPLTPWVYFSSAPAGMYGLLASQMMQRTGHPTVVVTRPARPDE
FVSGSGRAPEWFDIISSLEPHEGLSAIGHQQACGVKVERADRLTQLAQVLSDQTRLAMLR
RDPSASPGDLVLGTAEGADAPLTDMTPLIELVERLESLKPFGHAFAEPRVEVVLPPADLR
VGRIGSDADCDHERTPENGEEGERGWWVCFRCKKHLRVITRDGLACLWWNAADEHVEALA
SRVRDAQQAPGAEPFRFLAKLQLNEFMGETRVQLVIDEQLA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacctataccctcaccatcgacatcgacgacttcgctggtgtcaccggccagggcctc
ttcgccacgctctgcgctcgccggggctggaccgacgagtacctcgcaaccatccagtcc
gaggagcacgacgccctcaaggacgtcgagacaatggtcgccgtgctcgaagacgcccga
gcctcagggtccaaggtcgtcatcgcgcccgacttcgacatggacggcatcgcctccggc
atcctcggctacgcgggtctgtccgagctcggattcgacgtcgagctgcatctgcccgac
taccgccgcggtcacgacctgtgcccggaggacatcgccgagatccacgcggcctggccc
gatactcgggtgctgctcacctgcgacgggggagtgaactcccacgagggcatcgccgcg
gccaggtcgctggggtggacgacactggtgaccgaccaccacgccgagctcgagcccgga
tcgagcgccgacgtcaccgtcgacccctgccgcatcgatgagacctacgcgctcaagggc
atctgtggggcacacgtgctctaccaggtgatcgaggcccatgcagtcgcccaccgtccc
gacaagctgtgggaggtccgtctgctgcggctcttcgccggccttggcaccgtctccgac
gtgatgccgctgctgtatgagaaccgccagctcgtgcgcgattcgctctcgctggcccga
ctgctgtgggtcaggcctcccaagacggtccccaaccggttcggcggcctcgaccccgac
ctcaaaaggatcgacgtcgaccgggccgtcctactgcagttgctgcgcgccgacgaccac
cacccagtcttcctcgcggccttcgagggtttcgcgcttctactcaaggccttcacgcag
gcgggcaagatccgcgaggtcgactcgatcgacgaagggctctacggcttctacctggca
ccggcgatgaactcgccgcggcgcatcgaggctccgctggctccgtgcttcgaagtcttc
accgccccgacgcccgaggccaagctcgacgcggcccgggcggtcatcgagggtaacgag
caccgcaaggagctcaccgctgcctacaccgaggagatcctcggcgccgaccagccgctg
accccctgggtctacttctcctctgccccggcgggcatgtacgggctgctggccagccag
atgatgcagcgcaccggccacccgaccgtcgtcgtgacccggcccgcgcgtcccgacgaa
ttcgtctccggctctggccgggccccggagtggttcgacatcatctccagccttgaaccg
cacgagggactgtcggccatcggccaccagcaggcctgtggtgtcaaggtcgagcgcgcc
gaccggctcacacagctggcccaggtgctgtccgaccagacccggctggcgatgctccgg
cgcgacccctcggcctcgcccggcgacctcgtcctgggcacggccgagggggccgacgct
ccgctgacggacatgaccccgctcatcgagctcgtcgagcgcctggagtccctcaaaccc
ttcggccacgccttcgccgaaccgcgggtcgaggtcgtgctgcccccggccgacctgcgt
gtcggccgcatcggctccgacgccgactgcgaccacgagcgcacccccgaaaacggggag
gagggtgagcgcggctggtgggtgtgcttccggtgcaagaagcacctgcgggtgatcacc
cgcgacggcctggcgtgcctgtggtggaacgccgcggacgagcacgtcgaggcgctggcg
tccagggttcgcgacgcccagcaggccccgggcgcagaaccctttcgattccttgccaag
ctccagctcaacgagttcatgggtgagacacgcgtccagctcgtcatcgacgaacaactg
gcatga
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