Nonomuraea fuscirosea: OIE67_20380
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Entry
OIE67_20380 CDS
T09742
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nfs
Nonomuraea fuscirosea
Pathway
nfs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nfs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIE67_20380 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfs03021
]
OIE67_20380 (rpoB)
03400 DNA repair and recombination proteins [BR:
nfs03400
]
OIE67_20380 (rpoB)
Enzymes [BR:
nfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIE67_20380 (rpoB)
Transcription machinery [BR:
nfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIE67_20380 (rpoB)
DNA repair and recombination proteins [BR:
nfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIE67_20380 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WSA56883
LinkDB
All DBs
Position
complement(4456660..4460124)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAASRNASAVPAGPRRVSFARIAEPLEVPDLLALQTESFDWLLGNDAWKARVEAARLAGR
KDVPAQSGLEEIFEEISPIEDFSGTMSLSFRDHRFEPPKYSVDECKDKDMTFSAPMFVTA
EFVNNTTGEIKSQTVFMGDFPLMTTKGTFIVNGTERVVVTQLVRSPGVYFERSVDKTSDK
DLYGCKVIPSRGAWLEFEIDKRDSVAVRVDRKRKQAVTVLLKALGWTNEKILERFGRYES
MRATLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLYFNPKRYDLAKVGRYKIN
KKLGVDAEITHGTLTEDDIVSMIEYLVRLHAGESSMGAAGEVVVDVDDIDHFGNRRLRSV
GELIQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIREFFGTSQLSQFMD
QTNPLAGLTHKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGYLA
CFARLNAFGFVETPYRKVVDGRVTERIDYLTADEEDRFVIAQANSALTADGGFAESRVLV
RRKGEEFEHVRAGEVDYIDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQSVPLLKS
EAPLVGTGMEYRAATDTGDVLSAEKGGVVEEVSADYITVMNDDGTRTTYRVAKFKRSNQG
TSFNQKPIVAEGDRVEVNQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIILSQRL
VQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVPGDI
LVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEQGKVIGVRVFSRADGDEL
PPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIILNPLG
VPGRMNVGQVLEMHLGWIAARGWDISGIQEAWAERLRDKGFERVEPRTKMATPVFDGANE
EEIVGLLDSTVPNRDGDRMVRRSGKAQLFDGRSGEPFPYPIAVGYVYILKLHHLVDDKIH
ARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGRVKV
YEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELG
IDLSRREPSSVEEV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcctcgcgcaacgcctccgccgtacccgccggtccccgccgtgtctccttcgcc
cgtatcgccgagcctctcgaagttcccgacctcctcgccctgcagaccgagtccttcgac
tggctgctcggcaacgacgcgtggaaggcccgggtggaggcggctcgtctggccgggcgt
aaggacgttccggcccagtcgggcctcgaagagatcttcgaagagatcagtcccatcgag
gacttctcggggaccatgtccttgtcgttccgcgaccaccggttcgagccgcccaagtac
tcggtggacgagtgcaaggacaaggacatgaccttctccgccccgatgttcgtgacggcg
gagttcgtcaacaacaccaccggtgagatcaagagccagacggtgttcatgggcgacttt
ccgctcatgacgaccaaaggcacgttcatcgtgaacggcaccgagcgggtcgtggtcacc
cagctggtccgttcgccgggcgtctacttcgagcgcagcgtcgacaagacctcggacaag
gacctctacggctgcaaggtcatcccctcgcggggtgcctggctggagttcgagatcgac
aagcgcgacagcgtcgccgtacgcgtggaccgcaagcgcaagcaggccgtcaccgtgctt
ctcaaggcgctgggctggaccaacgagaagatcctcgagcgcttcggccggtacgagtcg
atgcgggccaccctggagaaggaccacacggccggccaggacgacgccctgctcgacatc
taccgcaagctgcggcccggtgagccgccgaccagggagtcggcgcagaccctgctggag
aacctctacttcaaccccaagcggtacgacctcgccaaggtcggtcgctacaagatcaac
aaaaagctcggggtggacgccgagatcacgcacggcaccctcaccgaggacgacatcgtc
tcgatgatcgaatacctggtgcggctgcacgccggcgagagctcgatgggcgcggcgggc
gaggtcgtggtggacgtcgacgacatcgaccacttcggcaaccgccgcctgcgcagcgtc
ggcgagctcatccagaaccaggtccgtctcggcctggcccggatggagcgcgtcgtgcgc
gagcggatgacgacgcaggacgtcgaggcgatcacgccgcagaccctgatcaacatccgc
ccggtcgtggcctccatcagggagttcttcggcacctcgcagctgtcgcagttcatggac
cagaccaacccgctggccggcctgacgcacaagcggcggctgaacgcgctcggccccggt
ggcctgtcccgtgagcgggcgggcatggaggtgcgcgacgtgcacccgtcccactacggc
cggatgtgcccgatcgagactcccgagggcccgaacatcggcctcatcggctatctcgcg
tgcttcgcccgtctcaacgcgttcggcttcgtcgagacgccgtaccgcaaggtcgtcgac
ggcagggtgaccgagcggatcgactacctgaccgccgacgaggaggaccggttcgtcatc
gcgcaggcgaactccgcgctgacggcggacggcggtttcgcggagagccgggtgctcgtg
cggcgcaagggcgaggagttcgagcacgtacgggccggcgaggtcgactacatcgacgtg
tcgccgcgccagatggtgtcggtggccaccgcgatgatccccttcctggagcacgacgac
gccaaccgcgccctgatgggcgcgaacatgcagcgccagtcggtgccgctgctcaagagc
gaggcgccgctggtcggcaccggcatggaataccgtgccgcgaccgacacgggcgacgtg
ctcagcgcggagaaggggggcgtggtggaggaggtctccgccgactacatcaccgtgatg
aacgacgacggcacgcggacgacgtaccgggtggccaagttcaagcgctccaaccagggc
acgagcttcaaccagaagccgatcgtggccgagggcgaccgggtcgaggtcaaccaggtc
atcgccgacggcccgtgcaccgacaacggtgagatggcgctgggcaagaacctgctcgtg
gcgttcatgccgtgggagggccacaactacgaagacgcgatcatcctgtcccagcggctg
gtccaggacgacgtcctttcctcgatccacatcgaggagcacgaggtcgacgcccgtgac
accaagctgggcccggaggagatcacccgcgacatccccaacgtctccgaggaggtcttg
gccgacctcgacgagcgcgggatcatccggatcggcgccgaggtcgtgcccggcgacatc
ctggtcggcaaggtcacgcccaagggcgagaccgagctgacgccggaggagcggctgctg
cgggcgatcttcggtgagaaggcccgtgaggtccgcgacacctcgctgaaggtgccgcac
ggcgagcagggcaaggtcatcggggtccgggtgttctcgcgcgccgacggggacgaactg
ccgccgggggtgaacgagctggtccgcgtgtacgtggcgcagaagcgtaagatcaccgac
ggtgacaagctggccggccggcacggcaacaagggtgtcatctccaagatcctgccggtc
gaggacatgccgttcctggaggacggcaccccggtcgacatcatcctcaacccgctgggc
gtgcccggccggatgaacgtcggccaggtgctggagatgcatctgggctggatcgcggcc
agaggctgggacatctccggcatccaggaggcgtgggccgagcggctgcgcgacaagggc
ttcgagcgggtcgagccacgcaccaagatggcgacgccggtcttcgacggggcgaacgag
gaggagatcgtcgggctgctcgacagcaccgtgccgaaccgtgacggtgaccggatggtg
cggcggagcggcaaggctcagctgttcgacggccgttccggggagccgttcccgtatccg
atcgccgtggggtacgtgtacatcctcaagctgcatcacctggtcgatgacaagatccac
gcgcgttcgaccggcccgtactccatgatcacccagcagccgctcggcggtaaggcccag
ttcggtggccagcgtttcggtgagatggaggtgtgggcgctggaggcgtacggcgcggcc
tacgccctgcaggagctgctgaccatcaagtccgacgacgttctcggccgggtgaaggtc
tacgaggccatcgtcaagggcgagaacatccccgagcccggcatccccgagtccttcaag
gtgctcatcaaggagatgcagtcgctgtgcctgaacgtcgaggtgctttccagcgacggc
atgtccatcgagatgcgcgacaccgacgaggacgtcttccgcgcggcggaggagctcggt
atcgatctgtcccggcgtgagccgagcagcgtggaagaggtctga
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