Nothobranchius furzeri (turquoise killifish): 107379273
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Entry
107379273 CDS
T05163
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K08131
collagen type IX alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107379273
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107379273
09142 Cell motility
04820 Cytoskeleton in muscle cells
107379273
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107379273
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Others
107379273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107379273
NCBI-ProteinID:
XP_015805447
UniProt:
A0A8C6LU03
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All DBs
Position
sgr05:54257293..54280379
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AA seq
661 aa
AA seq
DB search
MGASCDKQVSFLSELLMLALCIVSCFCQEEYSGYHSGEKHIYEESPAVDRYDGTDSHQPE
PTHLYDEDQQPEEDYNPTGVTMITEDTFPFVATTESHYAKEDKETMQVPFKYPRGPDSDS
SEESGGDAALGEEGPTECDCEPGQPGFAGFAGPKGSRGLQGQTGLPGIQGREGYKGAKGV
QGRRGDPGPVGDAGPEGEDGASGFSGGMGEPGLQGEPGEQGELGLKGDIGMEGPRGGVGA
PGETGPLGDPGPSGSKGGKGIKGSPGDQGKLGSRGKDGPKGQTGAPGFPGDIGERGYTGY
SGQPGSVGPTGPKGTKGHGGLPGSDGEPGEDGPIGTPGLMGEPGPFGVKGNKGDHGVRGP
RGRVGRVGAQGEAGDAGTHGKPGAKGLQGQTGAKGETGEDGEKGAAGRKGIKGEKGQKGG
RGDGGDKGQRGPKGAVGRSGIPGPVGPPGIPGTRGDRGVIGDLGVKGQAGPKGVPGPSGP
GLSDQQVLQLCTDVVKAQISQYAASIRAKCAQGCPINNRTLIGPPGVQGPLGQPGKAGKA
GKAGTKGARGVQGDRGLEGQKGAEGERGQKGSKGMGGDPGKGLPGLDGPQGLRGSPGDPA
EPKNGMDGPRGPRGFPGPMGPIGMVGLPGVPGFCEARDCSIHAPVMRKEQGLVKRPASSK
I
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgggggcctcctgtgacaagcaggtttccttcctctcagagctcctcatgttggcgctg
tgtatcgtctcctgtttctgccaggaggaatattctggataccactcaggtgagaaacat
atctatgaagagtcgcctgcggtcgaccgctatgacggcaccgattctcatcaacctgag
cccactcacctctatgatgaggaccagcagccggaggaagactacaaccccaccggggtc
accatgatcactgaggacacctttccttttgttgccaccaccgagtcccactacgccaag
gaggacaaagagaccatgcaggtaccgtttaaatacccaagagggcctgactcggactct
tcagaggaatctggaggtgatgcggcgcttggagaggagggaccaacggagtgtgattgt
gaacccggacaacctggttttgctggttttgcaggaccgaagggatcaagaggtctgcag
ggtcaaactggtcttccagggattcagggcagagagggttacaaaggagccaaaggagtt
cagggaagaagaggggaccctggtccagttggtgatgctggacctgaaggagaagatgga
gcttctggtttctctggcgggatgggagaaccgggacttcaaggggaaccaggcgagcaa
ggagaactgggactgaagggcgacatcggtatggagggccctcgtggaggagtcggtgct
cctggtgagactgggcctcttggtgacccgggtccttcaggatcaaaagggggtaaaggt
attaagggctctcccggtgaccaaggcaagctcggctctcgggggaaagatggaccaaag
ggtcaaacaggtgcacccgggtttccaggtgacatcggcgagcgtggatacactggttat
tcaggacagccaggatctgtcggaccaacaggaccaaagggcactaaaggtcatggtggc
cttccaggcagcgatggtgaacctggagaggacggtcctataggaacccctgggttgatg
ggagagcctggaccatttggtgtcaagggtaataaaggtgaccacggtgtgagggggcct
cgaggcagagtgggcagagtgggagctcaaggagaagctggagatgctgggactcatgga
aaaccaggagcaaagggtctccagggccagacaggggccaaaggagaaaccggagaagac
ggtgagaagggtgcagcagggcggaaaggcatcaaaggggaaaaaggacaaaagggaggc
agaggtgatggtggagacaaaggacagcgaggaccaaaaggtgcagtaggtcgttccggc
atcccgggccctgtaggaccacctggcatccccggcacccgcggtgaccgtggtgtcatc
ggtgacctgggtgttaaaggtcaagcaggaccaaaaggagttccaggtccatctggtcct
ggtctgagtgatcagcaggtcttgcagctctgtactgatgttgtgaaggcccagatctcc
cagtacgccgcttcaatccgagccaaatgtgcccagggctgtcccatcaacaacagaaca
ctaattgggccaccaggagttcaaggaccattgggacaaccgggcaaagctggtaaagca
ggaaaagctggaacaaaaggagccagaggtgttcaaggagacagaggactggagggacag
aaaggagctgagggggaacgaggtcagaagggatctaaaggcatgggaggtgatccgggc
aaaggactgccgggactggatggacctcagggactcagaggttcaccaggtgacccagca
gaacctaaaaatgggatggatggtccccgcggtcctcgtggcttccctggtcccatgggt
ccaatcggcatggtgggactcccaggcgtgccgggattttgcgaagcgagggattgtagt
attcatgcaccagtgatgcgcaaagagcagggcctggtgaaaagacctgcaagttcaaaa
atctga
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