Nothobranchius furzeri (turquoise killifish): 107389139
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Entry
107389139 CDS
T05163
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107389139 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107389139 (cnot1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107389139 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107389139 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107389139
NCBI-ProteinID:
XP_015820605
UniProt:
A0A9D3C0K6
LinkDB
All DBs
Position
sgr13:37920722..37950166
Genome browser
AA seq
2405 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHPTQFLIQECVSLISKPNFIATLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPDGFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLTTMLTCLKSCAG
SVSQELSEAILTMAANCNNAMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDHLTAIGSL
SLAGTATSHSQSMQSFQPSISSTLNNPLSPAKAFPPLPNPNPSTQFGGISSSLQLTGMDS
GSLGSGISSSSGFSLGMPTVSTDPFGTRKIGTSALNPQTFQQSKMKASDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLA
LAQVQAQVQQPTGLKPPQLGQPSTLVVTTTTTTTTAAKTTTITRPTPSSFKKDMPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNL
EEQLSAPKKEAKPPEEMLPVSTAGDFVPFSAPPSTPAATTTTCTTTGPPTPQFSYHDINV
YSLAGLGPHINININIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQII
RKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQ
REMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPV
VLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKVNLS
PVTIPKQNNQVWATDDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRSLLEAVALARN
SRDGIAALGLLQKAVEGLLDATTGADADLLLHYRECHLLVLKSLQDGRAYGPQWCNKQIT
RCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKQLLV
DERSVSHVTEADLFQTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSG
EATNTVTKINLLNKVLGIVVGVLIQDHDVRQTDFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKYLAPFLRNVELIKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVT
FLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVME
GTGAS
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcacccgacacagtttctgatccaggagtgtgtttcg
cttatatcaaagccaaactttattgctaccctgtgctacgccattgacaatccccttcac
tatcaaaagagtttgaagccatctgcccacctcttcactcaactgagtaaagtccttaag
ctcagcaaggtccaagaggtaatatttggccttgctttgcttaactccagcaacacagac
cttcgtggttttgctgcacagttcatcaagcagaaacttccagacctactgcgctcatac
gttgacgcagaccttggaggaaaccaagaaggtggcttccaagacattgcaatagaagtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtgggacag
gagcagattgacgctttcttaaagacactttgccgagattttccccaggagcgctgccct
gtggtgctcgcaccactgttgtaccctgaaaaacgggacattctcatggacaggattcta
ccagactcaggagagttagctaagaccatgatggagagttctcttgcagactttattcaa
gaagttggctatggcttctgtgctagtctggatgaatgcagaaacataatcctccagtat
ggtgtgagagaggtgacagccagccaggtagccagggtcctaggaatgatggcgcgaacc
cactctgggctatctgatggcattccgcttcagtcgatctccgccccaggaagtggtatc
tggagtgatggcaaggataagaacgacggttctcaggcacatacgtggaacgttgaggtt
ctcattgatgttgtcaaagaagtgaatcccaacttgaacttcaaagaggtgacgtatgaa
ctggaccacccaggcttcatcatccgggacagtaaaggcctgcacatagtggtgtatggg
atccagagagggctaggcatggaggtgttccctgtcgatctcatctatcgaccatggaaa
catgcggagggacagctgtcgttcattcagcactccctgattaacccagatgggttctgc
ttcgctgactatccttgtcacaccgtggccatcgacatcctcaaagcacctccagaagat
gacaacagagagatcgccacatggaaaagtctggacctggtggagagtcttctgcgcctc
tctgaggttgggcagtatgaacaggtgaagcagctcttcagcttccctatcaagcactgt
ccagacatgttggtgctggccctgctgcagatctccacctcctggcacacgctgcgccat
gagctcatctccactctgatgcccatctttctgggcaaccaccccaactctgctattatt
ttgcactatgcttggcacggacaggggcagtctccttccattcgtcagctaatcatgcat
tctatggccgagtggtacatgagaggagagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggatttgaagtccctctctatgctgctgaatggtactccatttgcc
ttcgttattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgaccgataaaatcagagagcatggggaaccctttatccaggcgtgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggcccctgataaggatcagcccaaaagt
gcccagctgccccctgagactttaaccaccatgctcacctgcctgaagtcctgtgctggg
agtgtttcccaggagttgtccgaggcgatccttaccatggctgccaactgtaacaacgcc
atgaacaaagctcggcagccgccaccgggggttatgcccaaaggacgcgcccccagcacc
agcagcttggatgccatctcacctgtgcagatggaccacctgactgcgattggttccttg
agcctggcaggaacagctacgtcccactctcagagcatgcagagcttccagccttccata
agttcaactctcaataaccctctgtcccctgctaaagccttcccaccgctccctaaccct
aatcccagcacgcagtttggcggaatcagttccagcttgcagctcacaggaatggactct
ggttctttgggctcaggtattagttctagcagtggctttagtctgggaatgcccacagtg
agcacggatccattcggcaccaggaagatcggcacatcggccttgaacccacaaaccttt
cagcagagtaagatgaaggcctcggatctctctcaggtgtggcctgaggcaaaccagcac
tttagcaaggagatagacgacgaagcaaacagttacttccagcggatctacaaccaccca
cctcacccaactatgtctgtagatgaagtgctggagatgcttcagaggttcaaagactca
accatcaaacgggagcgagaagtgttcaactgtatgcttcgtaacttgtttgaggagtac
aggttcttcccccagtaccctgacaaggagctgcacatcaccgcctgcctctttgggggc
atcattgagaagggtctggtcacctacatggctctgggcctggctctgcgatatgttctg
gaagccttacggaaaccatatgggtcaaaaatgtattactttgggattgctgcccttgat
aggttcaaaaacagacttaaggactatcctcaatattgtcaacacctggcttcaatagct
cacttcctgcaattccctcaccatttacaggagtgcgtgcagtatatcgagtatggccaa
cagtcacgggaccctccggtgaagatgcagggttccatcaccacaccaggaagcctggcg
ctggcgcaagttcaggcccaggtccaacaacctactggcctcaaaccgcctcagcttgga
cagcccagcaccctcgtcgtcaccaccaccaccaccacaaccacggcagccaagacgaca
actatcacaagacccactcccagcagcttcaagaaggacatgcctccctccataaacact
accaacatcgacaccctgctggtggccactgaccaaacagaaaggattgtagaacctcca
gagaacgtccaggagaagattgcgttcatctttaacaacctgtctcagtccaacatgaca
cagaaggtcgaggagctgaaggagactgtgaaagaagagttcatgccatgggtgtctcag
tacctggtgatgaagcgcgtcagcattgagcccaacttccacagcctctactccaacttt
ctggacactttgaagaacccagagtttgtcaagatggttctcaatgaaacttacagaaac
attaaggtgcttctgacgtcagacaaggcagctgctaacttctctgatcgctcgttgctg
aagaacctgggtcactggttgggcatgatcacgctggccaaaaacaagccgatcctttat
acagatctggagctcaaatccctgctcctggaggcctacgtgaaaggccagcaggagctg
ctgtatgttgttccgtttgtggccaaagtcttggagtccagtctacgtagcatggttttc
agacctcagaatccatggaccatggccatcatgaatgttctagctgagcttcatcaggaa
cacgacctcaagttgaatttaaagtttgagattgaagttctgtgtaagaacttgtctctg
gacatcaatgagctgaagccaggaaacctgctgaaggacaaagacaagctgaagaacctg
gaggagcagctgtcggcgccaaagaaagaagccaagcctccggaggagatgttacccgtc
tctaccgcaggagactttgttccattttcagctcctccctccaccccggctgctaccacc
accacctgcacaaccacaggcccccccacaccacagttcagttatcatgacatcaacgtg
tattccctggcaggcctggggccgcacatcaatataaacatcaacatccctctgctgcag
gctcatcctcagctcaaacagtgcgtgcggcagtcagtggagcgggcggtccaggagctg
gtgcaccctgtggtggatcgttccatcaagattgccatgacaacttgtgagcagatcatt
agaaaggactttgccctggactcagaggagtcccgcatgcgtgtggctgctcatcacatg
atgagaaacctgacagctggcatggccatgatcacctgccgggagcccctgctcatgagt
atcgccaccaatctgaagaacagctttgcggctgcgctgagagcaccaaccccgcagcag
agagagatgatggaagaggctgctgccaggatcgcacaagacaactgtgaattagcttgt
tgcttcattcagaaaaccgccgtggagaaagctggccctgaaatggacaagagactagcc
acggagtttgaactgaggaagcatgctcgccaagagggccgtcgttactgtgatcctgtt
gttctgacttatcaggctgaacgaatgcctgaacagatcaggctgaaggtgggaggagtg
gatcccaagcagctggcggtttatgaggaatttgccaggaatattccaggtttcctacca
agcaatgatctctcacaacccacaggcttcttggctcagcccatgaaggtgaatttatct
cctgtgaccatcccaaagcaaaacaaccaagtgtgggccacagacgacgtggctcagatc
tatgataaatgcatcaccgacttggagcagcatcttcatgctatccctccagcactggcc
atgaatcctctgacacagggtctgcgtagtttactggaagctgtggctttagccaggaac
tccagggatgggatcgctgctcttggcctcctgcagaaggctgtggaaggcctcctggac
gctacgacaggggctgatgctgacttgctgcttcactacagggagtgccacctgctggtg
ctgaagtccctgcaggatgggcgtgcatacggaccacagtggtgcaataagcagatcacc
aggtgtctgattgaatgtcgggatgagtacaagtacaacgtggaggcagtggagcttctg
atcaggaaccacctagtaaacatgcagcagtacgacgtgcacctggcacagtcgatggag
aacgggttgcactacatggccgtggcttttgccatgcagcttgtgaagcagctgctggtg
gatgagcgcagcgtgagccatgtgaccgaagctgacctcttccaaactattgagacctta
atgaggacctgtgcacactccagagccaacgcacctgaagggcttccccagctgatggat
gtggttcgctccaactatgaagccatgatagatcgtgctcatggtggccccaacttcatg
atgcactctgggatttcacaggcttcagaatacgatgatccaccgggcctgagggagaag
gcagagtaccttctgagagaatgggtcaacctgtatcactcagctgctgctgggagggac
agcaccaaggctttctctgcttttgttggccagatgcatcagcagggcatcttaaagacg
gacgacctgatcacacgcttcttccgactgtgcacagagatgtgcgtagagatcagctat
cgtgcacaagctgagcagcaacacaacccagctgccagtgcagccatcatcagagccaaa
tgttaccacaacctggacgccttcgtgaggctcatagcgctgctcgtcaaacactctgga
gaagcaaccaacacggtcaccaaaatcaacctcctcaacaaggtgctgggtatcgtcgtc
ggagtgctgatccaggaccacgatgttcggcagacagatttccagcagctaccctaccat
cgcattttcatcatgctactgctggagctcaatgctcctgaacatgtgctggaaaccatc
aacttccagacactcactgccttctgcaacacgttccacattctgagacccaccaaagca
cctggctttgtgtacgcctggctggaactcatctcccatcgtatcttcatcgccaggatg
ctcgctcacacaccgcagcagaagggttggcccatgtatgcacagcttctgattgatctc
ttcaagtacctcgcccccttcctgaggaatgtagagctcatcaaacctatgcaaatcctc
tacaagggaacgctgagggtgcttctcgtcctgctgcatgacttcccagagttcctgtgt
gactatcactacggcttctgtgacgttatcccacccaactgcatccagctccgcaacctc
atccttagtgccttcccacgcaacatgaggcttccagaccccttcactcccaacctgaag
gtggacatgctgagtgagatcaacattgctcctcgtatcctcaccaacttcacaggcgtc
atgccgtctcagttcaagaaggatctggactcctacctgaagacacgctcacctgtcacc
tttctgtctgagctgcgcagtaatctgcaggtgtcgaacgaaccgggaaatcgttacaac
atccagctgatcaacgctctggtgttgtacgttggcacacaagcaatcgctcacatccac
aacaagggcagcaccccctccatgagcaccatcacccactctgctcacatggacatcttt
cagaacctagctgtggacctggacacggagggacgttacttgttcttgaatgcaatcgcc
aaccagctgcgttacccaaacagccacacccactacttcagctgcaccatgctctacctg
ttcgccgaggctaacaccgaggccatccaggagcagatcaccagggttctgttggagaga
ctgattgtgaaccggcctcatccatgggggctcctcatcaccttcatcgagctgatcaag
aatcctgccttcaagttttggagtcacgactttgtgcactgtgccccggagattgaaaag
ctgttccagtccgtagcccagtgctgcatggggcagaagcaggcccagcaggtgatggag
ggaaccggtgccagctaa
DBGET
integrated database retrieval system
