Nothobranchius furzeri (turquoise killifish): 107390100
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Entry
107390100 CDS
T05163
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107390100 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107390100 (prpf40a)
Spliceosome [BR:
nfu03041
]
Complex A
U1 snRNP components
U1 related factors
107390100 (prpf40a)
Complex B
107390100 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
107390100
NCBI-ProteinID:
XP_015822124
UniProt:
A0A1A8AF64
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Position
sgr14:31575950..31604355
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AA seq
881 aa
AA seq
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MSSSENSTGSSQAASYPVVPPAAIPPPYMGPPGMPHYPAMGIPPMAQRPPSMTPLPPGIM
PPGIMPPMAAPPMGQMAGMMPPMMPGMMIPPRIPAASVQPTGPPGVDSTAAAPGTTSTAN
GSPQEEQPKKKSVWTEHKSLDRKTYYYNTETKQSTWEKPDELKSPAEQLLSKCPWKEYKS
DTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTTETVVPGTTAAPAVQAETTASMA
TVMEVETAAATAAVSEEPPSQVTVNQTAEVKAVDAPVTSSESAVVTESTASVEVKEEERP
ELQKKTYKWNTKEEAKQAFKELLKEKGVASNSSWEQAMKLIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEEARIKYKESKETFQRFLENNEKMTSTTRYKKAEQMFSELEVWSCVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDEL
HDHGQLHSMSSWMEMYPALSSNMRFASMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKD
ILKDKGFSVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEAR
KMKRKEAAFKTMLKQATPPLEPDASWEEVRERFLKESAFEDVTLESERKRIFKDFMHVLE
HECQHHHSKTKKHSKKSKKHHRKRSRSRSASESEDEDYHKKKKRSQSKSPSERSSSGESE
RSYKKSKKHKKKGKKRRHKSASPESDSEKKGRDRDGKRERDSEKDKENDKSRSKSRTESK
QKSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcagagaacagtactggctcgagtcaggcagcgtcttatccagttgtaccc
cccgcagcaatacctcccccatatatgggaccgccgggtatgcctcactaccctgccatg
ggaattcctcctatggcccagcgaccacccagtatgaccccattgccacctggtataatg
ccccctggcattatgccacctatggctgcaccaccaatgggacagatggcaggcatgatg
ccgcccatgatgccggggatgatgatcccacctcgcatcccagctgcatctgtacaaccg
acggggccgccaggtgttgactccacagctgcagcgcctggaacaaccagtaccgccaac
ggctcgccacaggaggaacagccaaaaaagaagtcggtgtggacagaacacaaatcacta
gataggaagacctattattacaatacggagaccaagcagtccacatgggagaagccggat
gaactcaagtctcctgcagagcaattactgtccaagtgtccttggaaggagtacaagtcc
gacactgggaagccttattattacaactctcagacaaaagagtccaggtggaccaagccc
aaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacaacagagacg
gtggttcctggaacgacagcagctcctgcagttcaagctgagactacagcctctatggcg
acagtgatggaggtggaaactgcagcagcaacagcagccgtctcggaggagccgccgtcc
caggtgacagtgaatcaaacagctgaggtcaaggctgttgatgcacctgtgacgtcctcg
gagagcgccgtcgtcacagaaagcacagccagcgttgaagtcaaagaagaagaacggcct
gaacttcagaagaaaacgtataagtggaacacaaaagaagaggccaagcaggccttcaag
gagctgctgaaggagaagggcgtggcatcaaactcctcctgggagcaggccatgaaactg
ataatcaatgatcctcgctacagcgctcttcctaagctgagtgagaagaagcaagcgttc
aatgcctacaaagtccagacagagaaggaggaaaaggaggaggcccggattaaatacaag
gaatccaaggagaccttccagagattcctggagaacaatgagaagatgacgtctacaacc
agatacaaaaaagcggaacaaatgttctctgagcttgaagtgtggagttgtgttcctgag
agagaccggctggaaatctatgaggatgtcttgttctacctggccaaaaaagagaaggag
caagccaagcagcttaggaagaggaactgggaggctctgaagaacattctagacaacatg
gccaacgtcacataccgcaccacttggtctgaggcgcagcagtatctgctggacaacccc
acgtttgctgaggatgaagagctgcagaacatggacaaagaagatgccctgatctgcttt
gaggagcacatccgcgctctggagaaagaggaggaagaggagaaacaaaagactcttctc
agagaaagacgacgacagcgcaagaacagggagtccttccagaaatttctggatgagctc
cacgaccatggccagctccactccatgtcttcctggatggagatgtacccggccttgagc
tccaacatgcgatttgccagcatgctgggccagcctggttccactccactggatcttttt
aaattctatgtggaagacttgaaagctcgttaccacgacgaaaaaagaatcatcaaagac
atcctgaaggataaaggattctcggtagaagtcaacaccagctttgatgattttggatca
gtgatcagttcagacaaaagagccaccactctggatgctggaaacatcaagttggccttc
aacagtcttctggagaaggctgaagccagagagagggagcgagagaaagaggaagcccgc
aagatgaaaagaaaagaagctgctttcaagaccatgctgaagcaggccacgccgcctctg
gagccggatgcatcgtgggaggaagtcagagaaagattcctgaaagagtccgcctttgag
gatgtgacgctggagtcggagaggaagaggattttcaaagatttcatgcatgttctggag
cacgagtgtcagcatcaccactccaagacaaagaagcattcaaagaagtccaagaagcac
cacaggaaacgatcccgctctcgatcggcttcagagtctgaggatgaggattaccacaag
aagaagaagaggtcacagtcaaagtctccttcagagcgctcatcgagtggagaatctgag
cgaagctataaaaaatccaagaagcacaagaagaagggcaagaagaggcgccacaagtct
gcatcgccggagtctgacagcgagaagaaaggaagagaccgtgacgggaagcgtgaacga
gattcagagaaggataaagagaacgacaagtctcggtctaaatctcgcaccgagtccaaa
cagaagtctcctaaaagaaaagcagccaaagaggagggcggctgggatacatcaggcagt
gagctgagtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgca
ccttga
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