Nothobranchius furzeri (turquoise killifish): 107394977
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Entry
107394977 CDS
T05163
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107394977
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107394977
09142 Cell motility
04820 Cytoskeleton in muscle cells
107394977
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107394977
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Others
107394977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
107394977
NCBI-ProteinID:
XP_015829705
UniProt:
A0A8C6MK57
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Position
sgr19:24853559..24890815
Genome browser
AA seq
946 aa
AA seq
DB search
MALYSFGLKRKPLCHLSSSAFSPLCVALLSLLVPPSLGQLDLSRLDGDTVCPPMRNGQDD
LPGFDLITQFQLDVIPLKGVKKVDGSTPLQVAYRLDKEANFQIPTMLNFPRGFPDEYSFM
TTFRMIKNTVNKVWNVWQIVEEDGNKQAGLRLNGDQQSLEYFLMGADGTLQTVTFPGLSV
LFNTKWHKVMVGVEHDQVTLYVDCQPVDQKPIKGKGPVNTEGDTLIGRLDSDPESSVVFE
LQWMLIHCDPKRAQRESCNELPASEMFANAEPEKPIQGPPGPPGPEGPRGAPGESGRDGR
DGLPGSPGGPGALGSKGEKGEIGLPGQRGIPGLPGASGPSGPMGPRGPVGERGLPGFPGP
SGPPGPSSEGAPGPPGKPGTPGDEGNIGPEGPPGPRGGSGVPGPPGPPGPPGPVGPPGAI
SEGSGEACPAACPAGPRGLAGLPGIKGHKGLPGEPGKDGDPGEKGEAGEAGPQGPPGHMG
DDGQRGPIGLPGTAGEKGDRGPPGYNGVPGPTGPPGAPGVEGIRGRQGLPGPKGDDGAVG
PQGQPGSPGEKGEHGAAGKNGVDGLPGAHGAKGEPGTPGAVGIRGVVGIPGLPGKQGVAG
PTGEKGETGAEGPTGPVGPPGKTGQSGKDGADGKPGEKGVPGDTGKQGPVGPQGPTGIQG
EKGDKGSVGAKGMKGHTGHKGDQGPVGPVGPKGSQGDTGLTGDPGVKGDQGPPGVPGIKG
ERGEKGPRGAIGIDGRPGQPGHEGVTGPMGARGLEGEPGLPGAPGPRGLPGPKVSDEKLR
EMCSAVVEEQLETFMKEFLKRPAAIGAPGTSGPAGPPGLPGPAGAAGAAGAPGPIGPKGH
PGFFGLPGAPGQKGDAGVKGDKGEDGIGIKGSPGEPGVPGAPGAPGIGKDGKNGERGMTG
SPGIPGPTGPRGPSGPPGLCDPSTCMSRIPPLYMVSGKKSSSYKNP
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggccctctacagctttggcttgaaaagaaagccactgtgccatttatcatcgtctgca
ttctcccccctatgtgtggctcttctgtcccttcttgtccctccatctcttggacagcta
gacctgagccggttggacggtgacaccgtctgcccaccaatgagaaatggacaagatgac
cttccaggtttcgatctgatcacccagtttcagctggatgtgattcccctgaaaggtgtg
aagaaggtagatggctccactcccctccaggtggcctatcgcctggacaaagaggccaac
ttccaaattcctacaatgcttaacttccctcgaggcttcccggatgagtactccttcatg
accaccttccgcatgatcaagaacacggtgaataaggtgtggaatgtttggcaaatagtg
gaagaagacggcaacaaacaggctggactccgactgaacggtgaccagcagtcgctggag
tatttcctgatgggtgcagatggaacgctacagacggtcaccttccctggtctttctgtg
cttttcaacactaagtggcacaaggtgatggtcggcgttgagcacgaccaggtcaccctg
tacgtagactgccagcctgtggatcagaagcccatcaagggaaaaggccccgtcaacact
gaaggagacactctcatcggcaggctggattctgatccggagtcctctgttgtgtttgag
ttgcagtggatgctgattcactgtgacccaaagcgagcccagagagagagctgcaacgag
cttcctgcctctgagatgtttgccaatgctgagcctgaaaaaccaattcaaggcccccca
ggcccccctggccctgaaggcccccgaggggctccaggagaaagtggcagggatggaaga
gatggtcttccagggtctcctggtggtccaggtgctcttggaagcaaaggggaaaagggg
gagatcggtcttcctggacagagaggcattcctggtcttccaggagctagtggtccatct
ggtccaatgggtcccagagggcctgtcggagagagaggacttcctggctttcccgggcct
tcaggtcctcccggtccatcaagtgaaggcgctcctggcccccctggcaaaccagggacc
ccgggggatgaagggaacattggaccagagggtccacctggtcctagaggaggatccggt
gttccagggcctcctggccctcctggtccaccagggccagtgggaccgcctggtgccatc
agtgagggaagtggggaagcttgtcctgctgcctgtcctgctggacctcgaggattggct
gggcttcccgggattaagggacacaaaggacttccaggcgagcctggaaaagatggagat
cctggagaaaagggggaagctggagaagcaggtcctcaggggccaccaggccacatggga
gatgatggacaacgaggaccaattggattacctggaactgctggagaaaagggggacaga
ggtcctcctggttacaatggggttcctggacccaccggcccacctggagctcctggtgtg
gagggaattcgtggacgacagggtttgccagggcccaagggagatgacggagctgtggga
ccacaaggacagcctggtagtccaggggagaaaggggagcatggagcagctgggaaaaat
ggcgtggatgggcttcccggagctcatggtgcaaagggggaacctggaacgccaggagca
gttggaatcaggggggttgttggtattccagggctgccaggaaagcaaggagtagctgga
ccaactggtgaaaagggtgaaactggagctgagggacctactgggccagttggacctcca
ggaaaaactggacaatctggaaaagacggagcggatggtaaaccaggagaaaaaggagtt
cccggtgacacaggaaaacaagggccagtggggccacaaggccctacagggatccagggt
gaaaaaggagataaaggtagcgttggtgctaaaggaatgaagggccatactgggcacaaa
ggggatcaggggcctgttggaccggtaggaccaaaagggagtcaaggagacacgggactg
acgggagaccctggggtcaaaggagatcagggccctcctggtgttcctgggatcaaagga
gagcgtggagaaaaaggcccaagaggagctataggaatcgatggcagaccaggtcaacca
ggacatgagggtgtgacgggtcccatgggagctagaggactggagggagagccaggactt
cccggggcaccaggtcctagaggtctacccggcccaaaggtgagcgatgaaaagctgcga
gaaatgtgctcggcagttgttgaagaacaattagaaacatttatgaaagagttcttgaag
aggccagcagctattggggctcctggtacctctggacctgcagggcctcctggactccct
gggccagctggagctgcaggagcagcaggcgctccagggccaattggtcccaaaggccat
cctggcttctttggacttccaggtgcaccaggccaaaaaggtgatgctggggtaaaggga
gacaagggggaggatggtataggaatcaaaggaagcccaggtgaaccaggtgtaccaggt
gcacctggtgcccctgggattggaaaagacggcaaaaatggagagcgtggtatgacagga
agtccaggtatcccagggcctactggtccaagaggaccatcaggaccaccaggcctttgt
gacccatcgacttgtatgagcagaattccacctctctatatggtcagtggaaagaaatct
tccagttacaaaaacccatga
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