Nannospalax galili (Upper Galilee mountains blind mole rat): 103735116
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Entry
103735116 CDS
T03372
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103735116 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103735116 (Cnot1)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103735116 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103735116 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103735116
NCBI-ProteinID:
XP_008832458
LinkDB
All DBs
Position
Un
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRSFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttctcatgtggattttagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccacttatttgctcagctgagtaaagttctcaaa
ttaagcaaagtacaagaggtaatttttggtcttgccctcttgaattcttccagctcagat
ctcagaagttttgctgcccagtttattaaacagaagcttccggatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctttttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaaaacactgcgcagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgattctggaggggtagctaaaaccatgatggagagctccttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcaattt
ggtgttcgggaagtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggactaacagatggtattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaatgtagaagtt
ttaattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaatccgtgacagcaagggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgtttccagtggacttcatatacagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
tttgctgactatccctgtcatactgttgccactgatattctgaaagcgccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctattgaggctt
gcagaggttgggcagtatgagcaagtaaaacagctcttcagcttccccatcaaacactgt
ccagacatgttagttttggccttactacaaatcaacacctcctggcacaccttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggctttgtcaatgctgctaaatggcacgccatttgcc
tttgttattgaccttgctgcacttgcttcgcgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaataagagaacatggggagccttttatacaagcgtgcatgactttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcaacccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgcaggg
agtgtttctcaagagttatcagagaccatcctcactatggtagccaattgcagtaatgtt
atgaataaggccagacagccaccacctggagtaatgccaaaaggtcgccctcctagtgct
agcagcttagatgcaatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaactgcattcagtggtattggaggactgtcatcacagcttccagtaggtggt
cttggcacaggcagcttgactggtataggaactggggcccttggacttcctgcagtgaat
aatgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtatggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagattcttct
ataaaaagggaacgagaagtatttaactgtatgctaaggaacttatttgaagaatatcga
tttttcccccagtacccggataaagaactacatataacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttggtattgctgcacttgataga
tttaaaaataggttgaaggactatccccagtattgtcagcacctggcttctattagtcac
tttatgcagtttccacatcatttacaggagtacatagagtacggacagcagtctagagat
cctcctgtgaaaatgcagggctctatcacaactccggggagtattgcattggctcaggcc
caggctcaggcccaggttccagccaaagctcctcttgctggtcaggttaacacaatggta
accacctcaacgaccaccactgttgctaaaacagttacagtcaccaggccaacgggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatagatacattgcttgtg
gccacagatcaaactgagagaattgtggagcccccagaaaatatccaagagaaaattgct
tttatctttaacaatctgtcacagtcaaatatgacacagaaggttgaagaactgaaagaa
actgtgaaggaagaatttatgccttgggtgtcacagtatctagttatgaagagagtcagt
attgagccaaactttcatagcctgtattcaaacttccttgacacgttgaagaatcctgag
tttaacaagatggttctgaacgagacctatagaaacattaaagtgttgctgacctctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggctagga
atgatcacattagctaaaaataaacccatcttacacactgacttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacaacaagagttgctttatgtagtaccctttgttgcc
aaagttctagagtctagtattcgtagtgtggtttttaggccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctgcaccaggaacatgacttgaagttaaacttgaag
tttgagattgaggtgctctgtaagaaccttgcactagacatcaatgagctaaaacctgga
aacctactaaaggataaagatcgcctaaagaacttagatgaacaactctctgctccaaag
aaagatgttaagcagccagaagaacttcctcccatcacaacaacaacaacttctacaaca
ccagctaccagtactacgtgtacagccacggttccaccacagccacagtacagctaccac
gatatcaatgtgtattctcttgcaggcctggcaccacatatcactctaaatcctacaata
cctttgtttcaggctcatccacagttgaagcagtgtgtgcgtcaagcaattgaacgggct
gttcaggaactagtccatcctgtagtggatcggtcaataaagattgccatgactacatgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctagaatgcgaatagca
gctcatcatatgatgcggaacttgacagctggaatggccatgattacttgcagggagcct
ttattgatgagcatatctaccaacctcaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggaccaagcagctgctcagttagctcaggacaattgt
gagttagcttgttgctttattcagaaaactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgcagatac
tgtgatcctgttgtgttaacataccaagcggagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctagctgtttatgaagagtttgcacgaaatgtgcct
ggcttcttacctacgaatgacttaagtcagcccacaggatttttagctcagcccatgaag
caggcttgggcgacagatgatgtagcacagatttatgataagtgcattacagaactggag
cagcacctacatgccattccaccgactttggccatgaaccctcaagctcaggctcttcga
agtcttttggaggttgtagtgttatctcgaaactctcgggatgccatagctgctcttgga
ttactccagaaggctgtagagggtttattagatgctacaagtggtgctgatgctgaccta
ttgctgcgctacagggagtgtcacctcttggtactgaaagcgctacaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagacgaa
tataaatacaatgtggaggctgtggagttgttaattcgtaatcatttagttaacatgcag
caatatgatcttcatctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaattctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgttccataccattgagaccctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgccccaactgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggtcctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagctgcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatactgaagactgatgac
ctcataacaaggttttttcgtctttgcactgaaatgtgtgttgaaatcagttaccgtgct
caggctgaacagcaacacaatcctgccgctaatcccaccatgattcgagccaagtgctat
cacaacctggatgcctttgtccggctcattgcactgttagtgaagcactcgggggaggcc
accaacactgtcacgaagattaacctgctgaacaaggttcttggaatagtagtgggagtt
ctcctacaggatcatgatgttcggcaaagtgaatttcagcagcttccctaccatcggatt
tttatcatgctgctgttggaactcaatgcacccgaacatgtgttggaaaccattaatttc
cagactcttacagctttctgcaatacattccacatcttgaggcctaccaaagctcctggc
tttgtatatgcctggcttgaattgatctcccatcggatatttattgcaagaatgctggca
cataccccacagcagaagggatggcctatgtatgcacagctattgattgatttattcaaa
tatttagcacctttccttagaaatgtggaacttaccaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccggagttcctttgtgattat
cattatgggttctgtgatgtgatcccacctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaacatgaggctcccagacccattcactcctaatctgaaggtggac
atgctgagtgaaattaacattgcaccccggatcctcaccaatttcactggtgttatgcca
cctcaattcaaaaaggatttggattcctatcttaaaactcgatcgccagtcacttttctg
tctgatctgcgcagtaacctacaggtatccaacgagcctggcaatcgctacaacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccatcgcacacatccacaataag
ggcagcacgccttcaatgagcaccattacccactcagcacacatggacatcttccaaaac
ctggctgtggacttagacactgaaggtcggtatctcttcttaaatgcaattgcaaatcag
ctgcggtacccaaacagccacactcactacttcagctgcaccatgctgtacctttttgcc
gaggccaacactgaagcgatccaggagcagatcacaagggttcttttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcatttaagttctggaaccatgagtttgtacactgtgccccagaaattgaaaagttattc
cagtctgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaagggacg
ggtgccagttag
DBGET
integrated database retrieval system
