Nonomuraea gerenzanensis: LCN96_33865
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Entry
LCN96_33865 CDS
T07782
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCN96_33865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngn03021
]
LCN96_33865 (rpoB)
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_33865 (rpoB)
Enzymes [BR:
ngn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCN96_33865 (rpoB)
Transcription machinery [BR:
ngn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCN96_33865 (rpoB)
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCN96_33865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UBU09340
LinkDB
All DBs
Position
complement(7276814..7280266)
Genome browser
AA seq
1150 aa
AA seq
DB search
MAASRNASPVPAGPRRVSFARIQEPLEVPDLLALQTESFDWLLGNDRWKARVEAARQAGR
RNVPSQSGLQEIFEEISPIEDFSGSMSLSFRDHRFEPPKYSVEECKEKDMTFSAPMFVTA
EFINNTTGEIKSQTVFMGDFPLMTPKGSFIVNGTERVVTSQLIRSPGVYFERTVDKTSDK
DLYGCKVIPSRGAWLEFEIDKRDSVGVRIDRKRKQPVTVLLKALGWTSERILERFGRFES
MRATLEKDHTAGQDDALLDIYRKLRPGEPPTKESAQTLLENLYFNPKRYDLAKVGRYKVN
KKLGLDLDIDVTVLTEDDIVATIEYLVRLHAGEESTGLPLEVDDIDHFGNRRVRSVGELI
QNQVRLGLSRMERVVRERMTTQDVEAITPQSLINIRPVVASIREFYGTSQLSQFMDQTNP
LAGLTNKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGYLACFGR
LNAFGFIETPYRKVVDGRVTDQIDYLTADEEDQFVIAQANSPLTADGAFADHRVLVRTKG
GEFEYVRSGEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQSVPLLKSEAPL
VGTGMEYRAATDTGDVISAEKAGVVEEVSADYVTVMNDDGTRTTYRVAKFKRSNQGTSFN
QKPIVAEGDRVEVNQVIADGPCTDQGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDD
VLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVPGDILVGK
VTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGRVIHTQVFSRDEGDELPPGV
NVLVRVLVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIILNPLGVPGR
MNVGQVLETHLGWIAARGWDISGIQEAWAERLRDKGFEQVAPRTNMATPVFDGAHEEEII
GLLGNTVPTRDGDRLVQSSGKARLFDGRSGEPFPYPIAVGYIYILKLLHLVDDKIHARST
GPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVQGRVKVYEAI
VKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLS
RREPSSVEEI
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcctcgcgcaacgcctctcccgtacccgccggtccccgccgcgtctccttcgcg
cgcatccaggagcctctcgaagttcccgaccttctcgccctgcagaccgagtcgttcgac
tggctgctcggcaacgacaggtggaaggcccgggtcgaggccgctcgccaggccgggcgc
aggaatgtcccgtcccagtcgggtctccaggagatcttcgaagagatcagtccgatcgag
gacttctccggatccatgtccctgtcgttccgcgaccaccggttcgagccgccgaagtac
tccgtggaggagtgcaaggagaaggacatgaccttctccgccccgatgttcgtgacggcg
gagttcatcaacaacaccaccggtgagatcaagagccagacggtgttcatgggcgacttc
ccgctcatgacgccgaagggcagcttcatcgtcaacggcaccgagcgggtcgtcacctcg
cagctcatccgctcgcccggcgtctacttcgagcgcaccgtcgacaagacctccgacaag
gacctgtacggctgcaaggtcatcccgtcgcgtggcgcgtggctggagttcgagatcgac
aagcgcgacagcgtcggggtgcgcatcgaccgcaagcgcaagcagcccgtcaccgtgctg
ctcaaggcgctcggctggacgagcgagcgcatcctggagcgcttcggccgcttcgagtcg
atgcgggccaccctggagaaggaccacaccgccggccaggacgacgccctgctcgacatc
taccgcaagctgcggccgggcgagccgccgaccaaggagtcggcgcagaccctgctggag
aacctctacttcaaccccaagcgctacgacctcgccaaggtcggccgctacaaggtcaac
aagaagctcggcctggacctcgacatcgacgtcaccgtcctgaccgaggacgacatcgtg
gcgaccatcgagtacctggtgcggctgcacgccggcgaggagtccacgggcctgcccctg
gaggtcgacgacatcgaccacttcggcaaccgccgggtgcgcagcgtcggcgagctcatc
cagaaccaggtccgcctgggcctgtcccgtatggagcgcgtcgtgcgtgagcgcatgacc
acgcaggacgtcgaggccatcacgccgcagagcctgatcaacatccgcccggtcgtggcg
tcgatcagggagttctacggcacctcgcagctgtcgcagttcatggaccagaccaacccg
ctggccggcctgacgaacaagcggcggctgaacgcgctgggccccggcggcctgtcccgg
gagcgggcgggcatggaggtgcgcgacgtgcacccgtcccactacggccggatgtgcccg
atcgagaccccggaaggccccaacatcggcctgatcggctacctcgcgtgcttcggccgc
ctcaacgccttcggcttcatcgagacgccgtaccgcaaggtggtggacggcagggtcacc
gatcagatcgactacctcacggccgacgaggaggaccagttcgtcatcgcgcaggccaac
tcgccgctgacggccgacggcgccttcgccgaccaccgcgtgctggtccgtaccaagggc
ggcgagttcgagtacgtacgctcgggcgaggtcgactacatggacgtgtcgccgcgccag
atggtgtcggtggccaccgcgatgatcccgttcctcgagcacgacgacgccaaccgggcc
ctgatgggcgcgaacatgcagaggcagtcggtgccgctgctcaagagcgaggcgccgctg
gtcggcaccggcatggagtaccgtgccgcgaccgacaccggcgacgtcatcagcgccgag
aaggccggcgtggtggaggaggtctccgccgactacgtcacggtcatgaacgacgacggc
acccgcaccacctaccgggtggccaagttcaagcgctccaaccagggcaccagcttcaac
cagaagccgatcgtggccgagggtgaccgggtggaggtcaaccaggtcatcgccgacggt
ccctgcacggaccagggcgagatggcgctgggcaagaacctgctcgtggcgttcatgccg
tgggagggtcacaactacgaagacgcgatcatcctgtcccagcggctggtccaggacgac
gtcctgtcctcgatccacatcgaggagcacgaggtcgacgcccgtgacaccaagctgggc
cccgaggagatcacccgggacatcccgaacgtctccgaggaggtcctggccgacctcgac
gagcgcggcatcatccggatcggcgccgaggtcgtgcccggcgacatcctggtcggcaag
gtcacgcccaagggggagaccgagctgaccccggaggagcggctgctgcgcgccatcttc
ggggagaaggcccgtgaggtccgtgacacctcgctgaaggtgccgcacggcgagtccggc
cgggtgatccacacgcaggtgttcagccgcgacgagggcgacgagctgccgccgggggtg
aacgtgctggtccgcgtcctcgtggcgcagaagcgtaagatcactgacggtgacaagctg
gccggccggcacggcaacaagggcgtcatctccaagatcctgccggtcgaggacatgccg
ttcctggaggacggcaccccggtcgacatcatcctcaaccccctcggtgtgcccggccgg
atgaacgtcggccaggtgctggagacccatctcggatggatcgccgcgcgtgggtgggac
atctcgggcatccaggaggcgtgggccgagcggctgcgtgacaagggcttcgagcaggtc
gccccgcgcaccaacatggccaccccggtcttcgacggcgcccacgaggaggagatcatc
gggctgctcggcaacaccgtcccgacgcgcgacggtgatcggctcgtgcagagcagcggt
aaggcccggctgttcgacggccgctccggcgagccgttcccgtacccgatcgcggtcggc
tacatctacatcctcaagctgctgcacctggtcgacgacaagatccacgcccggtcgacc
ggcccgtactccatgatcacccagcagccgctcggcggtaaggcccagttcggcggccag
cgcttcggcgagatggaggtctgggccatggaggcgtacggcgccgcctacgccctgcag
gaactgctgaccatcaagtccgacgacgtccagggccgggtgaaggtctacgaggccatc
gtcaagggcgagaacatccccgagccgggcatccccgagtccttcaaggtgctcatcaag
gagatgcagtcgctgtgcctcaacgtcgaggtgctctccagcgacggcatgtccatcgag
atgcgcgacaccgacgaggacgtcttccgcgccgcggaggagctcggcatcgacctgtcc
cggcgtgagccgagcagcgtggaagagatctga
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