Nocardia gipuzkoensis: LTT66_08340
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Entry
LTT66_08340 CDS
T07945
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LTT66_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngp03021
]
LTT66_08340
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_08340
Enzymes [BR:
ngp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LTT66_08340
Transcription machinery [BR:
ngp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LTT66_08340
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LTT66_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UGT70160
LinkDB
All DBs
Position
complement(1847473..1850979)
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILAVSTQTKAVAGIPGAPLRVSFAKIREPLEVPGLLDLQTESFAWLIGSPDWRER
AAARGDVGLVGGLEEVLEELSPIEDFSGSMSLSFSDPRFEEVKASIDECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDHSVDK
GTEKDLHSVRVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEEIVERFG
FSEIMMSTLEKDNTAGQDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGR
YKINKKLGIHVGEQVVGSVLTKEDIVNTIEYLVRLHSGDKTMTAPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVVDGRVTDEVRYLTADEEDRHVRAQANSPVDADGR
FLEDRVLCRRGNEENELVAATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLIRSEAPIVGTGMELRAAVDAGDVVVNEKAGVVEEVSADYVTVMADDGTRKSYRMR
KFNRSNQGTCSNQRPIVDEGQRVERGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVF
SREDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILATEDMPFLPDGTPV
DIILNTHGVPRRMNIGQILETHLGWIGKAGWRVDVAADGSRPDWAAALPEEMLGAPADSN
IATPVFDGAREEELTGLLASTLPNRDGERMVDDDGKAVLFDGRSGEPFPYPVAVGYMYIL
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGD
DEDLERAAANLGINLSRNEAATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctccacccagaccaaggcagttgccggaatcccc
ggagccccgttgcgggtgtctttcgcgaagatccgtgaacccttggaggtgcccgggctt
ctcgacctacaaacggaatcattcgcctggttgatcggttcgcccgattggcgtgagcgt
gcggccgctcgcggcgacgtcggcctagtcggtggcctcgaggaggtgctcgaggagctc
tccccgatcgaggacttctccgggtccatgtcgctgtcgttctcggacccacgcttcgaa
gaggtcaaggcctcgatcgatgagtgcaaagacaaggacatgacgtacgcggctccgctg
ttcgtcacggcggagttcatcaacaacaacaccggtgagatcaagagccagacggtcttc
atgggtgatttcccgatgatgaccgacaagggcacgttcatcatcaacggcaccgaacgc
gtggtcgtctcgcagctggtccgttcgccgggtgtctacttcgaccacagcgtcgacaag
ggcacggagaaggacctgcacagcgtgcgcgtgatcccgtcgcgcggcgcgtggctggag
ttcgacgtggacaagcgcgacaccgtgggtgtgcgcatcgaccgcaagcgccgtcagccg
gtcaccgtgctgctcaaggcgctggggtggaccaccgaggagatcgtcgagcgcttcggc
ttctccgagatcatgatgtcgaccctggagaaggacaacaccgccggtcaggacgaggcg
ctgctggacatctaccgcaagctgcgtccgggcgagccgccgaccaaggagtccgcgcag
accctgctggagaatctgttcttcaaggagaagcgctacgacctggcgcgcgtcggccgg
tacaagatcaacaagaagctcggcatccacgtgggcgagcaggttgtcggttcggtgctg
acgaaggaagacatcgtcaacaccatcgagtacctggtgcgcctgcactcgggtgacaag
accatgaccgcccccggtggcgtcgaggtcccggtggaagtggacgacatcgaccacttc
ggcaaccgtcgcctgcgcaccgtcggcgagctgatccagaaccagatccgggtcggtctg
tcccggatggagcgcgtggtccgcgagcggatgacgactcaggacgtcgaggcgatcacg
ccgcagaccctgatcaacatccgcccggtcgtcgccgcgatcaaggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgc
cgcctctcggcgctgggcccgggtggtctgtcccgtgagcgcgccggcctggaagtccgt
gacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctgtcggtgtacgcgcgggtcaacccgttcggtttcatcgag
acgccgtaccgcaaggtggtcgacggccgggtgaccgacgaggtccgctacctgaccgcc
gacgaggaggacaggcacgtccgtgcccaggccaactcgccggtcgacgccgacggccgc
ttcctcgaggaccgggtgctgtgccgccggggcaacgaggagaacgagctcgtcgcggcg
accgaggtcgactacatggacgtctcgccgcgtcagatggtgtcggtggcgaccgcgatg
atcccgttcctcgagcacgacgacgccaaccgcgccctgatgggtgcgaacatgcagcgt
caggccgtgccgctgatccgttccgaggccccgatcgtgggcaccggcatggagctgcgc
gccgccgtggacgcgggcgacgtcgtggtgaacgagaaggcgggtgtggtcgaggaggtc
tccgccgactacgtcaccgtgatggccgatgacggcacgcgtaagtcctaccggatgcgg
aagttcaaccggtcgaatcagggcacgtgttcgaatcagcgtccgattgtggacgagggt
cagcgggtggagcgtggtcaggtgctggctgatgggccgtgcaccgagaacggtgagatg
gccctgggtaagaacctgttggtggcgatcatgccgtgggagggtcacaactacgaggac
gcgatcatcctgtcgcagcggttggtggagcaggatgtgttgacctcgatccatatcgag
gagcacgagatcgatgctcgcgacaccaagctgggtgctgaggagatcacgcgggatatc
ccgaacgtttccgatgaggttttggccgatctggacgagcggggcatcgtgcggatcggt
gcggaggtgcgggatggggacatcctggtcggtaaggtcacgccgaagggtgagaccgag
ctgaccccggaggagcggttgctgcgggcgatcttcggtgagaaggcccgcgaggtgcgc
gatacgtcgttgaaggtgccgcacggtgagtcgggcaaggtgatcggtatccgggtgttc
tcccgggaggacgacgatgacctgccgccgggggtgaacgagctggtgcgggtgtatgtg
gcgcagaaacgcaagatccaggacggtgacaagctggccggtcgccacgggaacaagggt
gtgatcggcaagatcctcgcgaccgaggacatgccgttcctgcccgatggcacgccggtg
gacatcattttgaacacgcacggtgtgccgcgtcgtatgaacatcggtcagatcctggaa
acccatttggggtggatcggtaaggccgggtggcgggtcgatgtcgctgccgatggctcc
cgcccggactgggcggcggcgctgccggaggagatgctgggcgcgccggcggattcgaat
atcgccacgccggtgttcgacggtgcgcgggaggaggagctgaccggtttgctggcctcg
acgctgcccaaccgtgacggggagcggatggtcgatgacgacggtaaggcggtgctgttc
gacgggcgttccggtgagccgttcccgtatccggtcgcggtcggttacatgtacatcctg
aagctgcatcacctggtcgacgacaagatccatgcccgttcgaccggtccgtactcgatg
atcacccagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatg
gagtgctgggccatgcaggcctacggcgcggcgtacacgctgcaggagttgttgaccatc
aagtccgacgacgtggtcggtcgggtgaaggtctacgaagcgatcgtcaagggcgagaac
atcccggaaccgggcatcccggaatcgttcaaagtcctgctcaaagaactccagtcactg
tgcctcaacgtcgaagtgctgtcgtccgacggcgccgcgatcgagatgcgcgacggcgac
gacgaggatttggagcgcgcggcggccaacctgggcatcaacctgtcgaggaacgaagcg
gccaccgtcgacgatctggcgaactag
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