Neoarius graeffei (lesser salmon catfish): 132872251
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Entry
132872251 CDS
T10798
Symbol
skic3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132872251 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132872251 (skic3)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132872251 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_11
TPR_17
TPR_16
TPR_8
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
ChAPs
Fis1_TPR_C
HAT_PRP39_N
ARM_TT21_N
T7SS_EccA1_N
TPR_15
TPR_21
ARM_TT21_C
TPR_COPA_B
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
132872251
NCBI-ProteinID:
XP_060762937
LinkDB
All DBs
Position
24:complement(27321763..27458049)
Genome browser
AA seq
1579 aa
AA seq
DB search
MRSCARERLCTVTMANKEVKSALKSARDAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIG
VAASELEQPEQAQTAYRKAAELEPEQLLAWQGLANLYEKSDQADFKAELPKIYQKLITLY
ETSDKVKCFEVSKKLVDIYQTEKNYLQVARVWRRLIQVREAEDGIENFELVELWREMIRL
LLGSVEQQDNETQQHLLSAFEKALQLTENVPSDDHKQLIHDYVNCLSKLPHEVVKMKEMC
DTMLSLYPKDSYPLEVLGEHYLILDDCSEEAVSCYTRLLELDPVSSLAHFGLGKKALLDK
KYEDAIKSFGHGLKRMRSSVIGWYYLALAELKMHKYSDSALSARQGLQACAGFSEDWTQK
LMRVKLEVLVRAGSEQSADEALEMLSQMPDANNDPALLVLKGRAYLQKGKLEEALQVSSE
LLSSHPGSVEGLTIKGMTHRAKNEHQQAEQCFTEAVSQRPDSGELYFLLGQLYWNMGEDA
RRDKSKVHTHLLKAAKLDPHLGSVFCYLGHYYREVAKDQGRARGCYKKAFELDSTDAEAG
AATVDLSMEQGDMDSALAVLQAVTDRATPGSAKWAWMRRGLYHLKVGQHAQAIADLQAAL
RADPQDWVCWECLGEAYLNRHSFTAALKAFGKAHMLQPSSIYSLYQMASIKQILGRYKEA
AVEYQQIIETEEYVPALKGLGECLLAMAKTAMEDYLDGRAVDFIQEAIKYLFRAVQKRAD
LSCLWKLLGDACTKSSSVSPNRVCVLVPGALCGTEPSDKDHTLEQKQLLSLGERCYGRAL
KLMAEAPSLWCDLGLNYYHQSKLFLSTSTEQNVQPLLEKALQCVKKAVMLDSGNHMYWSA
LGVVAMTKGIENFALAQHSFIKSIRAEPNNVAAWTNLGTLYLKKGNIELAHEAFKIAQSL
EPLYVNCWIGQALIAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDKSNRDSE
LYRYNIVQMNAVSAAQVALTKYTERIQTDAEAFVMLGFLNEHMQLKKQATGAYKRAVELL
QSSPQTEELHFALRGYARALCDTDQWEEAVRHYSLTSLEELHDLTGMALACFRAGHLQES
VNAYERALAVASSEKEKAYILTALALLQHRLGNMDTAKTFLFKCSLLKEPIPESLLCLCA
LGLVHGDATLATAALSELLKLDEALRGAVEEHCLLTCTLLALQGNYSAVQREASRAVFRN
PGNPSLWALLSRLVPQYCPSKADGGAVAGSVACHASMTLGKRALLYSGVNQLASGRHSGE
DRRKNALKTVQRAVLLCPDDPAGWAGLMAACHAENVACALSGSSPCREGLERVFMTLVSE
KVKSLQREDGILARALDGWVLQQTLTGLKQSGQHDEAEALCSQVLSVSPKDPAVFLLLRQ
VQCECLLLSDARDCIPPTVLDQLSAAVMANPTSVSAWHWLAEVYRSQGLLAQASVALKQS
LQLASQLGHYSGKLSSLLRLALLSLTPCMAGVGGVEWSSLVREACTEVLKLGPCPVASLF
QALLQFSIKMGARETRRLLEKIVYGSGSRDVKTVAAVARWYLLRHLHAKDDLLLIDTLMM
EAEAAGDLRLLEFHKRLYP
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagttgtgcacgggagcggctgtgcactgtgacaatggcgaataaagaagtaaaa
tcggctctaaaaagtgccagagacgcgatcaaaaacaaggagtttaaagaagctctgaaa
cactgcaaggccgttctgaagcttgagaagaataactacaatgcctgggtgtttattgga
gttgcagcaagtgagctggagcagcccgagcaggcgcagacagcctacaggaaagctgca
gagctcgaacctgagcagctgcttgcatggcagggccttgcaaatctctatgaaaaaagt
gatcaagcagacttcaaagccgagttgcccaaaatctatcaaaaactcataacgttgtat
gaaacttcggataaagtcaaatgctttgaagtgagcaagaagttagtggacatatatcag
accgaaaagaactacttacaggtggcgagggtgtggcggcgcctcattcaggtgagagag
gcagaggatgggattgagaacttcgagctggttgaactctggagagaaatgatcaggctg
ctcctgggctcagtggaacaacaggacaacgagacgcagcaacatctcctgtctgctttt
gaaaaagctcttcagctcacagaaaacgtgccgagtgatgaccataaacagctcatccat
gattacgttaactgcctgtcaaaactccctcatgaagtggtgaagatgaaggagatgtgt
gacaccatgctgtccctctacccaaaagattcctatcctctggaagttcttggagagcat
tatttaattttagatgactgcagtgaagaagctgtcagttgttacactcgtctgttggag
ttggacccggtcagttcactggcccactttggtctgggtaaaaaagctcttctggacaag
aaatatgaggacgctatcaagagttttggtcatgggctgaagcggatgcgctccagcgtc
attggctggtactatctcgctctggctgagctcaaaatgcacaaatactctgatagtgct
ctgtccgccaggcaagggttgcaggcatgtgcagggttttctgaagactggacccagaag
ctgatgagagtaaagctggaggtgctggtgagagccggatcagagcagagtgcagatgaa
gctctggagatgctttctcagatgccagatgcgaacaacgatcctgctctgttagtgtta
aaagggagagcctatttacaaaaggggaagcttgaagaagccttacaggtgtcttctgag
ttgctgagctcacatcctggctctgtggaaggtttaaccataaagggaatgacacataga
gctaaaaacgaacaccagcaggcagagcaatgttttactgaagctgtgtctcagaggcca
gacagtggggagttgtacttcctgctggggcagctttattggaacatgggggaagatgca
cggagggacaagagcaaagttcacactcatctgctgaaggctgcgaagctggatccccat
cttggctccgtgttctgctacctgggtcattattacagggaagtagccaaagaccagggc
cgagcgagaggctgctacaagaaagcgttcgagttggactccactgatgcagaggctgga
gctgccactgtggacctcagcatggagcagggagacatggactctgctctcgccgttctt
caggcagtgacagacagagcaactccaggttcagcgaaatgggcttggatgagaagaggc
ctgtatcatcttaaagtgggccagcatgcacaggctattgcagatctgcaggcagcgttg
agggctgatcctcaggactgggtgtgttgggagtgtttaggcgaggcctacctgaaccgc
cacagctttacagctgccctcaaagcttttggcaaggctcacatgctgcagccgagctcc
atttacagcctctaccagatggcctccatcaaacagatcctgggcaggtacaaagaggcg
gcagtggagtaccagcagataatagaaactgaagagtatgtgccagctctgaaaggactt
ggagaatgtcttttggccatggctaaaacagcaatggaggactacctggatgggagagca
gtcgactttatacaggaagccattaagtatttgttcagggcagtgcagaagcgtgcagat
ctctcgtgtctgtggaagttgctgggagacgcctgtaccaaatccagttctgtttctccg
aaccgagtgtgtgtgctggtgcctggtgcactgtgtgggacagagccttcagataaggat
cacacactggagcagaaacagctgctcagtcttggggagaggtgttatggccgtgctctg
aaactgatggcagaagccccgagcctgtggtgtgacctgggcctcaactattaccaccag
tcgaagttgttcctgtccacatctacagaacagaatgtccagccactgctagagaaagcc
ttgcagtgtgttaaaaaggcagtcatgctggacagtgggaatcacatgtactggagtgca
ctgggggtcgtggctatgacgaaaggaattgaaaactttgcacttgcacagcacagtttc
attaaatcaatcagagcagagccaaataatgttgcagcatggacaaaccttggaactttg
tacctaaagaagggcaacattgagcttgcacatgaggcctttaagattgctcaatctctg
gagccgctgtatgtgaactgttggattggacaggcgctcattgctgagacagtgggaagc
tatgacaccatggatctcttcagacacacaactgagctcagcactcatactgaaggagtg
aagggttatgcctactgggtctgttccactctactggataagagtaaccgagactccgag
ctataccgctacaacattgtccagatgaacgctgtctcagctgcccaagtggccttaact
aaatatacagagaggattcagacagatgctgaagcttttgtgatgctgggcttcctgaat
gaacacatgcaactgaaaaagcaggcaactggagcctataagagagctgtggagttgctc
cagagcagcccacaaacagaagaactccactttgctctcagaggctatgctcgggccctc
tgtgacactgatcagtgggaggaggctgtccgtcattattccttgacatcactagaggag
ctgcatgatctcacaggcatggctctagcgtgctttagagcaggacatctgcaggagagt
gttaatgcctatgagagagctcttgcagtggcctccagtgagaaggagaaagcctatata
ttaacagctctggctttactacaacacagactggggaacatggacactgccaaaactttt
ctctttaagtgctccttgctaaaggagccaattccagagagtttgctgtgtctgtgtgct
ttgggtctagtccacggagatgccaccctggccaccgctgccctctcggagctgttgaag
ctggatgaagcattgagaggtgctgtggaggaacactgcctgcttacctgcactctgctg
gctctgcagggcaactacagtgctgtgcagagggaggcttccagagcagtgttcagaaac
ccaggaaacccgtccctctgggcactgctgtccagactggtgccacagtactgtcccagc
aaagctgatggtggagctgtggcaggtagcgtggcatgtcatgctagcatgactctagga
aagagggcactgctgtacagtggagtaaatcagttggcctcaggcagacactctggggaa
gacaggaggaagaatgctctaaagaccgtacagagagccgtgctgctctgtccagatgat
ccggcggggtgggcggggcttatggctgcatgtcacgcagagaatgtagcatgtgccctg
tcaggctcctccccgtgcagagagggtctagagagagtgtttatgacactggtgtcagag
aaagtgaaaagcctgcagagagaggatgggattttggctcgggctttggatggctgggtt
ttgcagcagactctgacaggactcaaacagagcggccagcatgatgaagccgaagctctg
tgttcacaggtgttgagtgtgtctcctaaggatcctgcagtgttcctgttgctcaggcag
gttcagtgcgagtgtctcctcctgtctgatgccagagactgcatcccccccacagtgctg
gaccagctgagtgctgctgtcatggccaacccaacctcagtatctgcctggcactggctg
gcggaggtgtaccgctctcagggtttgctggcacaggcctcggtggctctgaaacagagt
ctgcagctcgcctctcagctcggacactacagcgggaagctcagcagccttctgcgactc
gccctgctctctctcacaccctgcatggctggagttggaggagtagaatggagcagtctt
gttcgtgaagcctgtaccgaggtgctgaagctgggtccgtgtcctgtggcttcacttttc
caggctctgctccagttctccatcaagatgggagccagggagacacggcgtctgttggag
aagattgtttatggatcgggttcaagagacgtgaaaacggtagcagcagtggctcgctgg
tacctcctgcgccacctgcatgccaaagacgacctgctgctgatagatactctgatgatg
gaggctgaagcagcaggagacctcaggctgctcgagttccataaacggctttacccctga
DBGET
integrated database retrieval system
