Neoarius graeffei (lesser salmon catfish): 132874885
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Entry
132874885 CDS
T10798
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04141
Protein processing in endoplasmic reticulum
ngra04210
Apoptosis
ngra04217
Necroptosis
ngra04218
Cellular senescence
ngra04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132874885 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
132874885 (capn1b)
04217 Necroptosis
132874885 (capn1b)
04218 Cellular senescence
132874885 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132874885 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ngra01002
]
132874885 (capn1b)
Enzymes [BR:
ngra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
132874885 (capn1b)
Peptidases and inhibitors [BR:
ngra01002
]
Cysteine peptidases
Family C2: calpain family
132874885 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
132874885
NCBI-ProteinID:
XP_060767341
LinkDB
All DBs
Position
27:complement(10406875..10514231)
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AA seq
704 aa
AA seq
DB search
MYVIGGMSERIKYDRLRAEGAGTNEQALPFLNQDYEALKQECLESGSLFEDPCFPAQPHS
LGFKELAPYSSKTRGVEWKRPTELTDDPQFIVGGATRTDICQGALGDCWLLAAIASLTLN
DKLLHRVVPHGQSFTDDYAGIFHFQFWQFGDWVDIVIDDRLPVKDGELVFVHSAEGSEFW
SALLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRSAPRDLPRIITKALERGSL
LGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLREVDFRGNRERLIRIRNPWGQVEWTGAW
SDDSSEWNHIDPSDREEMNCKKEDGEFWMPFQEFKRQFSRLEICNLTPDALSDDSLSFWN
TIKFDGSWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPDDPEVACSFLVALMQKDRR
RYRKQGQDMHTIGFAIYEVPDEFRGSQSVHLKKEFFLRNSSCARSETFINLREVSTRLRL
PPGEYLVVPSTFEPGKEADFVLRVFTEKQSETEEMDDEVSFTPDEEEEISGEDIDSSFQN
LFAQLAGEDMEISVHELRTILNRVVSKHRDLKTDGFSMEACRSMVALMDKDGSARLGIVE
FQILWNKIRKWLGVFREFDLDKSGTMSSYEMRLALESVGFKLNNKLNQVLVARYADQDMI
DFDNFICCLVKLEAMFRVFKELDKDGSGVAELNISEWLYLTTCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgattggagggatgtcggagagaattaaatatgatcgcctgcgggccgagggc
gcaggcaccaacgagcaagcactgcccttcctcaaccaggactacgaggcactgaaacag
gagtgtttggaaagcggcagtctcttcgaggacccatgtttccctgcacagccacattca
ctcggattcaaggagctcgcgccttactcatctaaaacgcgtggagtcgagtggaagcgg
cccaccgagctgacggatgatccacagttcatcgttggaggagccactcggaccgatatc
tgccaaggagctctgggtgactgctggctgttagctgcgatcgcatccctcactctcaac
gacaagctcttgcatagggtggttcctcacggccagagcttcacggatgattacgccgga
attttccactttcagttctggcagttcggcgactgggtggacatagtcatcgacgaccgt
ctgcctgtaaaggatggagagctcgtttttgtgcactcggcagaagggtccgagttttgg
agcgccctgctggagaaagcctatgctaagttgaacggctcgtacgaggctctgtctgga
ggctccaccacggagggctttgaggatttcacaggtggcgtgtctgagatgtacgagctg
aggtcagcgcccagagatttgccccgcatcatcacaaaggccctggaacgaggatcgctg
ctcggctgctctatagacatcactagtgcctttgacatggaagcggtgaccttcaagaag
ctggtgaaaggtcatgcctactctgtgacaggactccgagaggtggatttccgtggtaac
agagagaggctgatccgtatccggaacccgtgggggcaggtcgaatggacaggggcgtgg
agtgacgattcatccgaatggaaccatattgatccgtctgatagagaggagatgaactgc
aaaaaagaggacggagagttctggatgccgtttcaggagtttaagcgccagttctcgcgc
ttggagatctgtaacctgacacctgatgcactaagcgatgacagtctgagtttctggaac
accatcaagttcgacggcagctggaggagaggaagcacagcaggaggctgcaggaatcat
cccaacacattctggataaacccgcagtacaagatcacgcttctggaagaggacgacgat
cccgacgatcccgaggtggcctgcagcttcctggtggcgctgatgcagaaggaccgacga
cgctaccgtaagcagggccaggacatgcacaccatcggctttgccatctatgaggtccca
gatgagttccgaggttcccagagcgttcatttgaagaaggagttcttcctccgcaactct
tcctgtgctcgctctgagaccttcatcaacctgcgggaggtgagcacgcgactccggctg
cctccgggtgagtacctcgtcgtgccctcgacgttcgaacccgggaaagaagccgacttt
gtcctccgcgtgtttaccgagaaacagtctgagaccgaagagatggatgatgaggtgtcg
ttcacgccggatgaagaggaagagatctctggtgaagatattgattcctcattccagaac
ctgtttgctcagcttgctggtgaggatatggagatctcagtccatgagctgaggaccatc
ctgaacagagtagtgtccaaacatcgggacctaaagacggacgggttcagtatggaggcg
tgcaggtcgatggtggctctcatggataaagacggaagtgctcgtctgggaattgtggag
ttccagatcctgtggaataagatcaggaagtggctgggcgttttccgggaatttgacctg
gacaaatcgggaaccatgagctcgtatgagatgcggttggccttggagtctgttggtttt
aagctcaacaacaagctgaaccaggtgctggtggcgcgttacgctgaccaagacatgatc
gactttgataacttcatctgttgcctcgtcaaactagaggccatgtttagagtctttaag
gagctggataaggacggctctggagttgctgagctgaacatctccgagtggctgtacctg
accacgtgcggctga
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