Neoarius graeffei (lesser salmon catfish): 132884801
Help
Entry
132884801 CDS
T10798
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ngra04040
]
132884801 (scn1lab)
Ion channels [BR:
ngra04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
132884801 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Spem1
ATP-synt_B
FUT8_N_cat
RhlB
IQ
Motif
Other DBs
NCBI-GeneID:
132884801
NCBI-ProteinID:
XP_060774749
LinkDB
All DBs
Position
4:7121441..7214091
Genome browser
AA seq
2005 aa
AA seq
DB search
MAAQLLVPPVPHSFQPFLPESLAAIERCIAEEAARQSKGERRSDEDDENGPKPNSDLEAG
KSLPFIYGDIPSGLVSVPLEDLDPYYNNQTTFIVLNRGKAIFRFNATPALYFLSPFNPVR
RLSIKVLVHSMFSFVIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVRIPQWNNTQNSTENNLMINI
RTGIDLLNTTNAFNWTEYINNKDNYYYLPNRRDALLCGNGSDAGQCPEGFDCIKAGRNPD
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNLIL
AVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQQVAAAAVTESGEYSGRGGLS
EESSSGGSRLSSKSAKERRNRRKKRKQREEEEKADQEKFHKSESEDSIRRSGFRFSIDAN
RLSYEKKCSTPNQSLLSIRGSIFSPRRNSRTSLFSFRGRARDFGSENDFADDEHSTFEDS
DSRRGSLFVPRRIERRNSTVSQCSLAAPRILLPANGKMHCTVDCNGVVSLVGGASVPTSP
IGRLLPEGTTTESEARKKRSGSQQASDYLDDAAARKRALSVASILTNTMEELEESRQKCP
PCWYKFANSFLIWDCCPQWLKVKELVNMVVMDPFVDLAITICIVLNTLFMAMEHYPMTKE
FNDVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGL
SVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKS
YRDCVCKIAEDCELPRWHMVDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVFMMV
MVIGNLVVLNLFLALLLSSFSADNLASTDDDSEMNNLQIAVGRIQRGIAFIKSALRQFLQ
SLFLAGTKPGALDEEKPLDDLHSDGKENCVANHAPVAVDLGKDFLKEGCVSPSNGVECSG
KYGIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSESSDVEGSKEKLPVDTVLS
SSEGSTVDIRPPGEGAESVELEPEESLDPEDCFTEGCMMRFQCCQVDVEKGRWRSWWTLR
KTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTVKTVLEYADKVFTYVFILEML
LKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVATALGYSELSAIKSLRTLRALRPLRALS
RFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNSTTDDLFPIN
VVNNKTECLALVNDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEEQ
PAYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNA
MKKLGSKKPQKPIPRPANKLQGLVFDLITKQAFDIIIMILICLNMVTMMVETDDQTKEMD
DILYRINLVFIVLFTGECVLKMFSLRHYFFTIGWNVFDFVVVILSIVGMFLSEVIEKYFV
SPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMS
NFAYVKHEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKREPDCDSETEHPGN
SYRGDCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWERFDPNATQFVEYDKLSDFADALDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDILFA
FTLRVLGEEGEMDALRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIIIQRAFRRYR
ICITVKKASDMFRQRLQDGGKPLPEKEVLVIGKFPENSASDKTDMTPSSASPPSYNSVAK
SEKDKYEKERREKENSTKDTRERKK
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccagctgctcgttcctcccgtacctcacagcttccagcccttccttccagaa
tcacttgctgccatcgagcggtgtatcgccgaggaggcggcccgacagtccaaaggcgag
aggcgtagcgatgaagatgacgagaacgggcccaaacccaacagcgacctggaggcaggg
aaatccctgcccttcatctacggggacatcccttctggactggtgtccgtacccctggag
gacctggacccttactacaacaaccagacaacttttatagtattgaatcgtgggaaggcg
atattccgtttcaatgccacgcctgccctctacttcctgagtccgttcaaccctgtaagg
agactctccattaaagtgctcgtgcattcgatgttcagttttgtgatcatgtgcaccatt
ctgaccaactgcgccttcatgacgcttagcaacccgccagactgggccaagaacgtggag
tacacattcacagggatttacacatttgagtctctgattaagatcctggctcgcggcttc
tgcgtgggaaaattcactttcctgcgagatccctggaactggctggacttcagcgtcatc
gtcatggcatatgtaactgaatttgtggatctgggcaatgtctctgcactgagaaccttc
agggttctgcgagcactcaaaactatttcagtgatcccaggcctgaagaccatcgtgggt
gctctgatccagtcagtaaagaagctgtcggatgtgatgatcctgaccgtcttctgcctg
agcgtgtttgcgctgatcggcctgcagctgttcatgggaaacctgcggcacaagtgtgtg
aggatcccacaatggaacaacacgcagaactccaccgaaaacaacctaatgatcaacatc
cgcacgggcatcgacctgctcaacaccaccaacgctttcaactggactgagtacatcaac
aacaaggataattattattatcttcctaaccgcagagatgccttgctgtgtggaaatggc
agtgatgcaggccagtgtcctgagggatttgactgtataaaggcgggacgtaaccctgat
tacggctacacaagcttcgacacgttcagctgggctttcctctcactcttccgcctcatg
acgcaggacttctgggagaatctctatcagcagaccctgcgtgctgctggaaagccttac
atggtgttctttgtgctggtgatcttcctgggatcgttttatctggtgaacttgatcctg
gctgtggtggctatggcgtatgacgagcagaaccaggccaccattgaggaggcgcagcag
aaagaggaggagtttcaggccatgctggagcagctgaagaggcagcaggaggaggcgcag
caggttgccgcggcagcagtgacagagagcggggagtatagcggcaggggcggcctgtct
gaggaaagctcctctgggggctccagactttcctcgaagagcgccaaggagcgacgcaac
aggcgcaagaagaggaagcagagggaggaggaggagaaagctgaccaggaaaagttccac
aagtccgagtcagaagacagcatccgccgctcgggctttcgcttctccatagacgccaac
aggctgtcctacgagaagaagtgctccaccccgaatcagtctctcctcagtatccgtggc
tcgatcttctctccaaggaggaacagccgcacgagtttgtttagctttcgcggccgagcc
cgggactttggctcggagaacgattttgcggatgatgagcacagcacgttcgaggacagc
gacagccggcgaggctcactcttcgtaccgcggcggatcgagaggaggaactcgacggtc
agtcagtgcagccttgctgctccacggatcctgcttccggccaatgggaagatgcattgt
actgtcgactgtaacggagtggtgtctttggtgggcggggcctctgtgcctacttcaccg
attggccgattgcttcctgagggcacgaccacagagtccgaggctcgtaagaagcggtct
gggtcacaacaggcttctgattacctggatgacgctgcagctaggaaaagagctctaagt
gtagccagtattctcacaaacacaatggaggagctggaggagtcgagacagaagtgcccc
ccctgctggtacaaatttgccaacagcttcctgatctgggactgctgcccccagtggctg
aaagtgaaagagctcgtcaacatggtggtcatggatccgttcgtagacctggccatcacc
atctgcatcgtcctcaacaccctcttcatggccatggagcactaccccatgaccaaagag
ttcaacgacgtgctctcggttggaaatctggtattcacagggatcttcacagctgagatg
tgtctaaaggtcattgctctggacccctactactacttccaggagggctggaacatcttt
gatggcatcatcgtgagtttaagcctgatggagctgggactggcgaatgtggaggggctg
tctgtgctcaggtctttccgattgctgcgagtgttcaagcttgccaagtcatggcccact
ctgaacatgctgatcaagatcatcgggaactctgtgggcgccctggggaacctgaccctc
gtcctggccatcatcgtcttcatctttgccgtggtgggcatgcagctgttcggaaagagc
taccgtgactgcgtgtgcaagatcgcagaagactgcgagctgccacgctggcacatggtg
gatttcttccattcgttcttgattgtgttccgcgtgctatgcggcgagtggatcgagacc
atgtgggactgcatggaggtggccggtcagaccatgtgcctcatcgtcttcatgatggtc
atggtgattgggaacttggtggttttgaacctcttcctggccctgctgttgagctccttc
agcgccgacaacctggcctcgacggacgacgacagcgagatgaacaacctccagattgcc
gtgggccgcatccagagaggcatcgcgttcatcaagtcggcactgaggcagttcctgcag
agcctcttcttggctgggaccaaacctggcgccctggacgaggagaagcctctggacgac
ctgcacagcgacggcaaggagaactgcgtggccaaccacgcccctgttgctgtcgacctc
ggtaaggactttctcaaggagggctgcgtgtcacctagcaacggggtggaatgctctggg
aagtacggcatcgaggaaggggactacatgtcatttatccacaaccccagcctcacggtc
acggtgcccatcgccgtgggcgagtcagacttcgagaacctcaacacggaggacttcagc
agcgagtcgtccgacgtagaggggagcaaagagaagcttcctgtggacacggttctgagt
tcttctgagggaagcacagtggacatcagacccccgggagagggggctgaatcggtggag
ctagaaccagaagagtcactggaccccgaggactgcttcactgaaggctgcatgatgagg
tttcagtgctgtcaggtggacgtggagaaagggcgatggaggagctggtggactctcagg
aaaacctgttttattatcgtcgagcacaactggttcgagtccttcatcattttcatgatc
ctgctgagcagtggtgctctggcgtttgaggatatctacatagagcagcggaagacggtc
aagacagtgctggaatatgccgataaagttttcacttatgtcttcatcctggagatgttg
ctgaaatgggtggcttacggcttcgtcaaatatttcaccaacgcctggtgctggctcgac
ttcctgattgtagacgtgtctctggtcagccttgttgctactgctctgggttactccgag
ctgagtgccattaaatcactgaggactctacgcgctctgagaccgctaagagcattgtca
cgcttcgagggcatgagggtcgtagtgaatgctctgctcggcgccatcccctccatcatg
aacgtgctgctcgtgtgtctgatcttctggctcatcttcagcatcatgggcgtcaacctg
ttcgccggcaagtactaccactgcgtcaacagcaccacagacgacctcttccccatcaac
gtggtgaacaacaagaccgagtgcctggcgctggtcaacgacagcgcccgctggaaaaac
gtcaagatcaacttcgacaacgtgggagccggatacctggccctgctccaagtggccacc
tttaaaggctggatggacatcatgtacgccgcagtagactctcgtaatctggaggaacag
ccggcttatgaagtgaacctgtacatgtacctgtacttcgtcatcttcatcatcttcggc
tccttcttcacactcaacctcttcattggtgtcatcatcgataacttcaaccagcagaag
aaaaagtttggaggtcaagatattttcatgacagaagagcagaagaagtactacaacgcc
atgaagaagcttggctcgaagaaaccgcagaaacccatcccgagacccgcaaacaaactt
cagggccttgtctttgacctgatcaccaaacaagccttcgacatcatcatcatgatcctg
atctgcctgaacatggtgaccatgatggtggaaaccgacgatcagacgaaagaaatggac
gacatcctctaccggatcaacctggtcttcatcgtgctcttcaccggcgagtgtgtgctg
aagatgttctcgctgagacactacttcttcaccattggctggaacgtgtttgactttgtg
gttgtgattctgtccatcgtcggaatgttcctctcagaggtcatcgagaagtatttcgtg
tcgcccaccttattccgagtcatccggttggctaggatcggccgtatcctccgtctcatc
aagggggccaagggtatccgaaccctcttgttcgccttaatgatgtcacttcctgccttg
ttcaacattgggctcttgcttttcctggtcatgttcatctacgccatttttggcatgtct
aactttgcctatgttaaacacgaagctggaatcgatgacatgttcaacttcgagaccttc
ggaaactccatgctgtgcctcttccagatcacgacgtcagccggctgggatgggcttctg
gcacccatcttgaacaagcgcgaacctgactgtgacagtgagactgagcacccaggcaac
tcgtaccgcggtgactgtggcaacccatcagtgggcatcttcttcttcgttagctacatc
atcatctgcttcctgatcgtggtcaacatgtacattgctgtcatcctggagaacttcagt
gttgctacagaggaaagtgcagaaccgttaagcgaggatgattttgagatgttctatgag
gtgtgggagcgcttcgacccgaacgcgacgcagtttgttgaatatgacaagctgtcagac
tttgcagatgccctggacccaccactgcgaatccctaaacccaacaagatccagctgatt
gcgatggacctgccgatggtcagtggagaccgtatccactgcctggacatcctgtttgcg
tttacactgcgtgtgctgggcgaggagggtgagatggacgcgctgcgtggccagatggag
gagcgtttcatggcctccaatccatccaaagtgtcctacgagcccatcaccaccaccctg
cggcgcaagcaggaggaaatgtcagccatcatcatccaacgagccttccgacgctaccgc
atctgtattacggtcaagaaggcgtcagatatgttccgccagcgactgcaggatggcggc
aaacctctgcctgagaaagaggttctcgtgattgggaagtttccagagaactcggcatcg
gacaaaacggacatgaccccgtcttcggcttcaccaccttcgtataacagcgtggccaaa
tcagagaaggacaagtatgagaaggaaagacgggagaaggagaacagtacaaaagacacg
cgcgagagaaagaaatga
DBGET
integrated database retrieval system
