Neoarius graeffei (lesser salmon catfish): 132891806
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Entry
132891806 CDS
T10798
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03013
Nucleocytoplasmic transport
ngra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132891806 (upf3a)
03015 mRNA surveillance pathway
132891806 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132891806 (upf3a)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132891806 (upf3a)
mRNA cycle factors
P-body specific factors
132891806 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
132891806
NCBI-ProteinID:
XP_060785769
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All DBs
Position
9:53909217..53925090
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AA seq
482 aa
AA seq
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MRAEKEPTTGSRERGVVEIQLRDTPREQDSATANSKHKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDIILFRDRFDGYVFIDNKGQ
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSIANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLTEKDIKIKLLKKCDRDDEMESDRLKDKGDSGETERNKWEKSAGLTKAK
EPKDNRAQPESDKEQRDGHSRRQRDKDQRGREEERKRQRHHYEFDKFMRRKEETKWGKGY
CHDRAKKDGHHHGYSYCLEMGDKSSKEDRDDMGNRKERIRNKSVLVHQEKRTSQSEGPDQ
IGGALPAKDRPAMQLYQPGARNRKRMGSGNKVFDFSRLSPEPSTEPCYELTIGTGSEKSG
DE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaaaaggagccgacaacgggaagcagagagagaggcgtcgtcgagatacag
ctgagggacactccgagagagcaggacagcgccacggccaattcgaagcacaaagaggag
aaaaaggaaatcttcaccaaggttgtgattcgacgtcttccacccagcctgtccaaagac
cagcttgaggagcatctcagtccactgccttcttatgactattttgagttctttcctgct
gatcaaagcctgtatccacatcttttctccagagcatacatcaattttaaaaacccagaa
gacatcattctcttcagagatcgttttgatggttatgtttttattgataataaaggtcaa
gaatatccagctattgtagaatttgcaccgtttcaaaaggtttctaagaagaagctgaag
aagaaagatgccaaagcgggaagcattgaagaagatccagaatacaaacgatttctggag
aactactcttgtgatgaggagaagtcaatagccaatccagaaacactgttgggagaaatt
gaagctaaaacaagagagctcatagctaaaaggacaacaccacttctggaatacattaaa
aacaagaagttggagaagcagagaattcgggaggaaaaaagggaggagaggcgacgtcga
gaactagagaagaaacggcaaagggaggaggagaaaaggaaacggcgagaagaggagagg
cgaaaacgcaaagaggcagagaagcagaagaaactcacggaaaaggatatcaaaatcaag
cttttaaagaaatgtgacagggatgatgaaatggaatcagacagactgaaagacaaagga
gacagtggagagacagagaggaacaagtgggagaaatccgcaggcctcaccaaggcaaag
gaacctaaagacaatagagctcagccggagagtgataaggagcagcgggatggccacagc
cgccggcaaagagataaagaccagaggggccgagaagaagagcgcaaacggcagcggcat
cactatgagtttgacaagttcatgcgccgcaaggaggagaccaaatggggcaaaggctat
tgtcacgatcgggcaaagaaagatggccaccaccatggctactcctactgccttgagatg
ggggacaaatcaagcaaggaggaccgggatgacatggggaacaggaaggaacgtattcgt
aataagtctgtattagtgcatcaggagaaaaggacctcccagtctgaggggccagaccag
ataggaggggctctgccagccaaggaccgacccgccatgcagctgtaccagccaggagcc
cgtaaccgtaagcgcatgggctctgggaacaaagtctttgatttcagccgactctctcca
gagccaagcaccgaaccctgctatgagctgaccataggaacaggctctgagaaaagtgga
gatgagtga
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