Neorickettsia helminthoeca: NHE_0107
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Entry
NHE_0107 CDS
T03076
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nhm
Neorickettsia helminthoeca
Pathway
nhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHE_0107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhm03019
]
NHE_0107
03009 Ribosome biogenesis [BR:
nhm03009
]
NHE_0107
Enzymes [BR:
nhm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NHE_0107
Messenger RNA biogenesis [BR:
nhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NHE_0107
Ribosome biogenesis [BR:
nhm03009
]
Prokaryotic type
rRNA processing factors
NHE_0107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
FBPase_glpX
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHX11077
UniProt:
X5GVK8
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All DBs
Position
95667..97334
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AA seq
555 aa
AA seq
DB search
MKKILIDSTEDETRVAILKDGLLIGYDLESASNLPQKGNIYLGVVFRVDDSLQAAFVEYL
PGEYGFLPFSEIPVTYFDLLEDVKVNAIAEDKHVYLYKNFNATEVIKKGLVIFVQVTKEK
RRNKDVTLTAYVRLPNRYCVLMPFSKDFVLSKQISDEKAVNRLTQLVEEKIGDRKYGVIF
KSYCENADEKNIINDYNLLVSQWDAIASRKEEGKAPRLIFREANLVKKILRDSYDSSVGA
IIINDKHVYQETVDYVQSALYFDNHHVTLYEERLPLFDKYKVEAQIDSLYEENVPLRNGG
YIVINTTEALTAIDVNSGRMKKETNIEETAYKVNMDAVVEIVRQLELRGIAGIIVIDLID
MSNSKYIANVEKALLDGFKRYKARVQITSINKFGLVTISKQRTRHNISEFHMAKCPQCGG
KGKTLKLEYQVRRVFSSIYTSPPCREVSIITGPEMAAFLFNNYRSKIIRAEEEIGVKISI
KVDVHMDPLKGFEISVQGKDKGVSISAIQEKNHDVAPISEGQVAIKETPIQSRSLASASR
RSWVASWIRRLVGSQ
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagatactcatagattcaactgaagatgaaaccagagtcgctatcctgaaggat
ggcctgttgatcggatatgatctcgaaagtgcttctaacctccctcaaaagggaaatatc
tatttgggtgtagtcttcagggtcgatgattcgcttcaggctgctttcgttgagtacttg
cctggagaatacgggtttctaccgttctctgagattcccgtgacgtattttgatctcctt
gaggatgtgaaggtcaatgctatcgcagaagacaagcatgtgtatctttacaagaacttc
aatgcgacggaagtcatcaaaaagggattggtgatcttcgtccaggttaccaaagaaaag
cgacgcaataaagatgttaccttgaccgcctatgtgagattacccaatagatattgtgtt
ctcatgcctttttccaaagattttgttttatctaagcaaatttccgatgagaaagctgtg
aaccgcttgacacaacttgtagaggagaaaataggtgatcgaaagtatggtgttatattc
aagtcctactgcgagaatgctgatgaaaaaaatatcatcaatgattataacctgctggtc
tcccagtgggatgcaatagcatccagaaaagaagaaggtaaagcacccaggttgattttc
cgtgaagcaaacttggtcaagaaaattctcagagattcctatgatagcagtgttggagca
ataatcatcaatgataagcatgtctaccaggaaacagtcgattatgtgcagagtgctcta
tattttgataaccaccatgtcactctttatgaagagagattacctcttttcgataaatat
aaggtagaggctcaaattgatagtttgtatgaggaaaacgtccctctaagaaatggaggt
tatatcgtcatcaatacaactgaagcactcacagcaatagatgtgaactccgggagaatg
aaaaaggaaactaacatcgaagaaactgcctacaaagtcaatatggacgctgtcgtcgaa
atagtacgtcagctggagctcaggggaatagcaggaatcatcgtgatagatctcatagat
atgagtaattccaaatatatcgcgaacgtcgaaaaagccctacttgatggatttaagcgc
tataaggcaagagtccagattacctcaattaataaattcggacttgttacaatttccaag
cagaggaccagacataatatttccgaatttcacatggctaagtgtccacagtgcggaggt
aaaggaaaaacgctcaagctagaatatcaagttcgtagagtcttctcgagcatatatacc
tctcctccgtgtagggaggtctccattataacaggccccgaaatggcagcctttctattc
aataattatcgtagtaagataatccgcgctgaagaggaaattggagtcaagatcagcata
aaagtcgatgtgcacatggatccgctcaaaggatttgaaatctctgtccagggcaaggat
aagggtgtgagtatatcagcgattcaggaaaaaaatcatgatgttgccccgatctctgaa
ggacaggttgcgatcaaagaaacgccgatccaatcgcgatctctagccagtgcttctagg
agatcctgggttgcttcgtggatccgtagattagtaggatcgcagtaa
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