Neorickettsia helminthoeca: NHE_0641
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Entry
NHE_0641 CDS
T03076
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nhm
Neorickettsia helminthoeca
Pathway
nhm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nhm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHE_0641 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhm03021
]
NHE_0641 (rpoB)
03400 DNA repair and recombination proteins [BR:
nhm03400
]
NHE_0641 (rpoB)
Enzymes [BR:
nhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHE_0641 (rpoB)
Transcription machinery [BR:
nhm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHE_0641 (rpoB)
DNA repair and recombination proteins [BR:
nhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHE_0641 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHX11576
UniProt:
X5H4T8
LinkDB
All DBs
Position
complement(606850..610926)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSGFRRLYFDELLFDFPDLVKVQKDSYFSFIGGGGSISSIQDIFASVFPISDGYGRASLE
FVSCRVGEPKHDEYGCIERGITYAAPLRAVLRLVVFADESVVSSEKSAKSEQNPSSPSIK
DIREQEIYMGDIPIMSKNGTFVINGVERVVVSQMHRAPGVFFDNDKAKSISGKLNYIARI
IPYRGSWLDFEFDAKDILYFRIDKKRKLPVTFLLRALGLSNKEIFSCFCEITECRRTQDG
KWVSLFVPEKFKGVRLQYDLINTDTGEVVLKKGSRVSIALAKSLYAKGLRHYFMDVEVMK
DMYLADDLLSTKGEFLLPHGTKLTKEHIAKTEFLDVDLLKLVDLKGNYMFNAVLQYDCSY
EEAMLSIYRVVRPGEIPSVESAEKLFESLFFLPERYDLLNVGRVRLNAKFNLNHDENLTV
LTKEDILCTIKELMNLQRDVGDVDDIDHLGNRRVRSVGEFMDNQFRVGLVRMVRVIIENM
ATADFDTVMPCDMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLN
RGRAGFEVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRNGKI
TDEVTYLSAIDEIKANICQASVRVDDDGYILDDLVYCRRNYENVFIPRDEVQFADVSAKQ
IVSVAASLIPFLENDDANRALMGSNMQRQAVPLMVPEAPLVGTGMESYVARGSGAVVVAK
RAGVVEYIDAKNIVVASESKEDFWIDSYMLHKFRKSNHNTCIHQRCVVYQGQRVKAGDIL
ADGPATQQGELALGRNLIVAFMSWRGYNFEDSIVISSNVARDDIFTSVHLEGFECIVRDT
RLGPEELTRDIPGVAEEFLHSLDEFGIVCVGASVESGDILVGKVTPKSSSPVTPEEKLLR
AIFGEKAIDVKDSSLYLPPGVSGCVVDVKILQRRGIEKVGRALLIEKQAVDSEKAKRDHE
LTVLANYIYSILKEMLVGKVALNSLNGISEGDVITETALLSINREDWWKLSVEGIASIKL
LRQRFVDRSAEINKVYEENFEKIRGDDDLAQGVLTVVKVFVAVKHTLQPGDKMSGRHGNK
GVISRIVPAEDMPYLSDGTPVDIILNPLGVPSRMNVGQILETHLGWAVYNLGKKVSKLLD
ENNFPELKSLLFEIYKNDKKMMAILKGMSDDEVLHYSQSLRKGIPVAASVFEGPKTDEIE
RLLILAGKDPSGQEVLYDGVTGEQFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYSLITQ
QPLGGKSHFGGQRFGEMECWALQSYGATFALQEMLTIKSDDVVGRVNVYDSIVRGDNNFY
YGIPESFNVMMNELRALCLNVEFCSLSEKKGRSFLDVE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtctggatttcgcaggttgtattttgatgagttgctctttgactttcctgatctggta
aaagttcaaaaggattcgtatttttcatttataggaggcggaggttccatttcttcgata
caggatatttttgcttctgtttttcctataagcgatgggtacggaagggcttcgctggag
tttgttagctgcagagtaggtgagccaaagcatgatgaatatggctgtatagagaggggt
atcacctacgcagcaccgctcagagcagtacttagattggtcgtttttgcagatgaatct
gttgtttcatctgagaaatcagctaagtctgagcagaatccgagtagcccttcgataaaa
gatataagagaacaggaaatatatatgggtgatatacccattatgtccaagaatggtacg
tttgtgataaatggtgtcgagcgcgttgttgtgtcacagatgcatcgagctccaggggta
tttttcgataacgacaaagcgaagtccatttcgggaaaacttaattacatagctcgtatt
ataccttatagaggatcgtggctggatttcgaattcgatgctaaagatattctgtacttt
cgtatagacaaaaaaagaaaacttcctgtcacttttcttttgagagccttgggattgtca
aataaggagatcttttcctgtttttgcgaaatcaccgaatgtcgtcgcacccaggatggt
aagtgggtgagtcttttcgttcctgagaaattcaagggcgtgagactgcaatacgacctc
atcaacactgacaccggtgaagtggttctgaagaagggtagtagagtctctatagctctt
gctaaaagcttgtatgcaaagggtcttcgtcactacttcatggacgtcgaggtcatgaag
gatatgtaccttgctgacgatctgctctccactaagggggaattccttcttccgcatgga
acaaagttgacaaaagaacatatcgcgaaaacggaattcttggacgtcgacttgctcaaa
ttagtggatctcaaagggaattacatgttcaatgcagttctccaatatgattgctcgtac
gaggaagcgatgctatccatatatagagtcgtacggccaggcgagattccctcggtcgag
tccgcggagaagctctttgagtcactcttcttcctccctgagagatatgatcttctgaac
gtcggtagggtcagattaaatgcaaaattcaacctgaatcacgatgaaaacttaactgtc
ctcacaaaagaagacatcctctgtaccatcaaggagttaatgaacttgcagagagatgtt
ggagatgtcgatgatattgatcatctgggaaatagacgcgtcagatctgtcggtgagttc
atggataaccagttcagggtagggctggtgagaatggtaagggtcattatcgaaaatatg
gctacagctgatttcgatacagtaatgccgtgtgatatgataaattccaaaattcttggt
gctgtgatacgggaatttttcatgtcttcagctctttctcagttcatggatcaaacaaat
cctttatccgaaatcacacataagcgacgcatatctgcattagggcccggtggattaaat
agaggcagagcaggattcgaagtgcgtgacgtacacactacgcactacggtaggatctgt
gcaactgaaacaccagaaggcgctacaattggtctgataaatagtcttgctatatatgca
aaaatcaataagtatggcttcatagagacgccttaccgctatgttcgaaatggtaagatc
acggatgaagtgacatacctatccgcgattgatgagatcaaggcaaatatttgtcaggcc
agtgtcagagtcgatgatgatggctatatactagacgatcttgtctactgtcggagaaat
tatgaaaatgtttttattccccgggatgaagtccagttcgcagatgtctcggcaaaacag
attgtatcagttgccgcctctttgataccgttcttggaaaatgacgatgcaaatagagct
ttgatgggttccaatatgcagagacaagctgtgcctcttatggtgcctgaagctcctctg
gttggtactggtatggaaagctatgttgctcgtggttccggggctgtagtagtggcaaaa
cgtgctggtgttgttgagtatatcgatgcaaaaaatatagtcgttgcttccgaatctaag
gaggatttttggatcgattcatacatgttgcataaattcaggaagtcaaatcacaataca
tgtattcatcagagatgtgttgtataccagggtcagcgcgtcaaagcgggtgatattctt
gccgatggtcccgctacacaacaaggcgagctcgctcttggccggaatttgatagtagcg
ttcatgtcttggcgcggttacaacttcgaagactctattgtcatctccagcaacgttgcc
agggatgatatctttacctctgtgcatttggaaggatttgagtgtattgttcgcgataca
agactcggtcctgaggagttgactagagatatccctggggtagctgaagagttcctgcat
agcctggatgaattcggtatagtttgtgtaggggcaagtgtcgagtcaggagatatactc
gtgggtaaggtgacgcctaaaagtagctcccctgtaacgcctgaagaaaaattgcttcgc
gccatttttggtgaaaaggcaatcgatgtgaaggattcctctttgtatctgccaccaggg
gtgtcaggttgtgtggtggatgtaaaaatcctacagcgcaggggtatagaaaaggtcggt
agggcgctgttgatagaaaaacaggctgtagattccgagaaggcaaagcgtgatcatgag
cttacggtgcttgcgaattacatctactcgattcttaaggagatgctggtgggtaaagtc
gcactgaatagccttaatggcatatctgaaggcgatgtcatcactgaaactgcactcttg
tcgataaatcgagaggattggtggaagctgagtgtcgagggtatcgcctcaataaaactt
ttaagacagagattcgtggaccgttctgcggaaataaataaggtctacgaggaaaacttt
gagaagattcgtggcgatgacgatctggcacaaggtgtcctgacggttgtaaaggtgttc
gtcgctgttaaacacaccctccagcctggggataaaatgtcaggtagacacggtaacaag
ggtgtcatctcaaggatagttccagctgaagatatgccttacttgtccgatggaacccca
gtagatatcatcctcaaccctcttggtgttccttcgcgaatgaacgtcggacaaatattg
gaaacccatctcggttgggcggtttataatcttgggaagaaggtaagtaaactcctcgat
gagaataattttcctgaattgaaatcattacttttcgaaatctacaagaacgataagaaa
atgatggctatactaaagggtatgagcgatgatgaagtactgcattattctcagtctttg
aggaagggtatcccagttgcggcgtctgtcttcgaaggcccaaagacagacgagattgag
agactcctaatcttggcaggtaaggatccttcaggtcaggaagtgctgtacgatggcgta
acaggggagcagttcgataggaaagtgactgtcggatgtaagtatatgctgaaactccat
cacctagtaaatgataagattcatgcccgctctatcggttcttatagcctcataacgcaa
cagccgctcggtggtaaatcccactttgggggacagaggttcggtgaaatggaatgctgg
gccctccagtcctacggcgcgacttttgctctgcaggaaatgcttactatcaaatccgat
gatgtcgtcggtcgtgtgaatgtctatgactcgatagtaaggggtgataataatttctat
tatggcattcctgagtcatttaacgtaatgatgaatgaactcagagctttatgtctgaat
gtggagttttgttccctctcggagaaaaaaggtcgttctttccttgatgtagaataa
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integrated database retrieval system
