Novosphingobium humi: PQ457_00675
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Entry
PQ457_00675 CDS
T08806
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nhum
Novosphingobium humi
Pathway
nhum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nhum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQ457_00675 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhum03021
]
PQ457_00675 (rpoB)
03400 DNA repair and recombination proteins [BR:
nhum03400
]
PQ457_00675 (rpoB)
Enzymes [BR:
nhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQ457_00675 (rpoB)
Transcription machinery [BR:
nhum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQ457_00675 (rpoB)
DNA repair and recombination proteins [BR:
nhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQ457_00675 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WCT77542
UniProt:
A0ABY7TWA8
LinkDB
All DBs
Position
147794..151945
Genome browser
AA seq
1383 aa
AA seq
DB search
MATQPISRASAKRRIRKIFGDIHEVTQMPNLIQVQRESYEQFLRSNPAVGYVSGLEKTLR
SVFPIRDFAGTSELDFVHYELEEPKYDITECRQRGITYAAPMKVTLRLIVFEVDAETETR
SVLDIKEQDVYMGDMPLMTENGTFVINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKFLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLNDEEILHYFYQTIVWNR
ASGGWKIPYVAEAWRGAKPAFDIVDAASGEVVFAAGTKISPRAANKAEKDGLKDLLIPTE
EIFGRYSANDVINESTGRIYIEAGEEVTAENLAALDAAGIDAFELLDIDHVSTGPWIRNT
LKADKAEDRDHALADIYRVMRPGEPPTRETAEALFAGLFFDADRYDLSAVGRVKLNMRLG
LECDDTITTLRTDDIMAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETP
YRKVIDGKVTGDVVYLSAMEEQKHTVAQASAETNADGSFVEELVSARQNGEFVMAPRETI
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMEETVAR
DSGAAIAASRAGIVDQVDATRIVIRVSGDIEPGKSGVDIYTLQKFERSNQSTCINQRPLV
KVGDSVEKGDIIADGPSTELGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSI
HIEEFEVMARDTKLGPEDITRDIPNVGEESLRNLDEAGIVYIGAEVHPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNE
EIERLAKDREDERAILNRATFNRLKDMLIGQVAAAAPKGLKKGIEITEEVLAEVERYEWW
KFAVADDARQQQLEATKAQYDTAIKAIVEKFEDRKEKLERGDELAPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLG
WAARGLGRKIGAALDAWREANPNPQAGEPPEAVRELLKDIYGDNYTADLDDRSDLEIIEL
AQSVRNGVPMGSPVFDGAVEADVTAMLRKAGLDESGQVTLFDGRTGEAFDRKVTVGMKYV
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSLTDEDGDDLAD
AAE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcaacccagcccatctcccgcgcttcggccaagcgccggatccgcaagatcttcggt
gatattcacgaagtgacgcagatgccgaacctgattcaggttcagcgcgaatcctatgag
cagttcctgcgctcgaaccccgctgtgggttacgtctcggggctggaaaagacgctgcgt
tcggtgttcccgatccgcgactttgccggcaccagcgagctggactttgtccattacgaa
ctggaagagcccaagtacgacatcactgaatgtcgtcagcgcgggatcacctatgccgct
ccgatgaaggtgacgctgcgcctgatcgtgtttgaagtcgacgccgagaccgaaacccgg
tcggtgctcgatatcaaggagcaggacgtgtacatgggcgacatgccgctcatgaccgag
aacggcaccttcgtcatcaacggcaccgagcgcgtgatcgtgtcgcagatgcaccgttcg
ccgggcgtgctgttcgaccatgaccgcggcaagacgcattcctcgggcaagttcctgttc
gccgcccgcgtgatcccttatcgcggctcgtggctggactttgaattcgacgccaaggac
atcgtcaacgtccgtatcgaccgcaagcgcaagctgcccgttacggcgctgctgcatgcg
ctgggtctgaacgacgaagagatcctgcattatttctatcagacgatcgtctggaaccgc
gcgagcggcggctggaagatcccctatgttgccgaagcatggcgcggcgccaagcccgcc
ttcgacatcgtcgatgcggccagcggtgaagtggtctttgcagcgggcaccaagatcagc
ccgcgcgctgccaacaaggcggaaaaggacggcctcaaggatctgctgatcccgaccgag
gaaatctttggccgttacagcgccaatgacgtgatcaatgaatcgaccggccggatttat
atcgaggccggcgaggaagtgacggccgaaaacctggccgcgctcgacgctgccgggatt
gacgctttcgaactgctcgacatcgaccatgtcagcactggtccgtggatccgcaacacg
ttgaaggccgacaaggccgaagaccgcgatcacgctctggccgacatctatcgcgtgatg
cgccccggcgaaccgccgacgcgcgaaaccgccgaagcgctgtttgccggcctgttcttt
gacgctgaccgctatgacctctcggccgtgggccgcgtcaagctgaacatgcgtcttggc
ctggaatgcgatgacacgatcaccacgctgcgcaccgacgacatcatggccgtcgtcaag
gagctggtgaacctgaaggacggcaagggcgaagtcgatgacatcgacaacctcggcaac
cgccgcgtgcgttcggtgggcgagctgctggaaaaccagtatcgcgtcggcctgctgcgc
atggagcgcgccgtcaaggagcgcatgagcagcgtcgatgtctcgaccgtgatgcccaac
gacctcatcaacgccaagcccgccgtggccgcggtgcgtgagttcttcggctcctcgcag
ctgtcgcagttcatggaccagaccaacccgctgtccgaagtgacgcacaagcgccgcgtt
tcggcgctcgggccgggcggtctgacgcgtgagcgcgcgggctttgaagtccgcgacgtt
catccgacgcactatggccgtatctgcccgattgaaacgcccgaaggcccgaacatcggt
ctgatcaactcgctttcgacctttgcgcgcgtcaacaagtacggtttcatcgaaaccccg
taccgcaaggtaatcgacggcaaggtcacgggcgacgtggtctatctctcggcgatggaa
gagcagaagcacacggtggcgcaggcttcggccgaaaccaacgcggatggctcttttgtc
gaagaactggtcagcgcgcgtcagaacggcgaattcgtgatggcgccgcgcgaaacgatc
acgctgatggacgtttcccccaagcagctcgtttcggtggccgcctcgctcattcccttc
ctggaaaatgacgacgccaaccgcgcgctcatgggctcgaacatgcagcgtcaggctgtg
ccgctggtgaaggccgatgcgcctttcgtcggcacgggcatggaagaaaccgtggcgcgc
gattcgggcgccgcgattgctgcttcgcgcgccggtatcgtcgatcaggtggacgccacc
cgtatcgtgatccgcgtgtcgggcgacatcgagccgggcaagtcgggcgtggacatctat
acgctgcaaaagttcgagcgttcgaaccagtcgacctgcatcaaccagcgtccgctggtg
aaggtgggcgacagcgtcgaaaagggcgatatcattgccgacggtccctcgaccgagctg
ggcgagttggcgctgggccgcaacgtgctggtcgcgttcatgccctggaatggctacaat
tacgaagactccatcctgatcagcgaacgcatcgtgaaggaagacgtctttacctcgatc
cacatcgaggaatttgaagtcatggcccgcgacaccaagcttgggcctgaagacattacc
cgcgacatcccgaatgtgggcgaggaatcgctgcgcaatctcgacgaagcgggcattgtt
tacatcggcgccgaagtgcatccgggcgatatccttgtcggcaagatcacgcccaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgcgatctttggtgaaaaggccagc
gacgtgcgcgacacctcgctgcgtctgccgccgggcgtggccggcacgattgtcgacgtt
cgcgtcttcaaccgtcacggtatcgaaatcgacgaccgtacccgcgcgatccagaacgag
gaaatcgaacgcctcgccaaggaccgtgaggacgagcgcgcgattctgaaccgcgccacc
ttcaaccgtctcaaggacatgctgatcggccaggtggccgcagccgcgcccaagggtctg
aagaagggcatcgagatcaccgaagaagtgctggccgaggtcgagcgctacgaatggtgg
aagtttgccgtggccgatgatgcgcgccagcagcagctggaagcgaccaaggcgcagtat
gacacggccatcaaggcgatcgtcgagaagttcgaggaccgcaaggaaaagctggagcgc
ggcgacgaactggctccgggcgtgctcaagatggtcaaggtgttcgtggcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcatcatcagccgc
atcctgccgcaggaagacatgcccttcctcgaggacggtacgccggtggacttcgtactg
aacccgctgggtgtgccttcgcgcatgaacgtgggtcagatcttcgaaacccatctgggc
tgggccgctcgcggtctgggtcgcaagatcggtgctgcactggatgcatggcgcgaagcc
aatccgaacccgcaggcgggcgagccccccgaagcggtgcgcgaattgctcaaggacatc
tacggcgacaattacaccgccgatctggatgaccgcagcgatctggagatcatcgagctg
gcccagagcgtccgcaacggcgtgccgatgggttcgccggtgttcgacggtgcggtggaa
gccgatgtgaccgcgatgctgcgcaaggcggggctggatgaatcgggtcaggtgaccctg
ttcgacggtcgcaccggcgaggcgttcgaccgcaaggtgaccgtgggcatgaagtatgtg
ctcaagctgcaccacctggttgacgataagatccacgcacgttcgatcgggccctactcg
cttgttacccagcagccgctgggcggtaaggcgcagttcggtggtcagcgctttggtgaa
atggaagtgtgggcgctgcaggcttatggcgcggcttacacgcttcaggaaatgctcacc
gtcaagtcggacgacgtggtgggccgcaccaaggtgtatgaagccatcgtcaagggcgac
gacacgttcgaggccggtatccccgaaagcttcaacgtgctcgtcaaggaaatgcgctcg
ctggggctgaatgtcgaactgtcctcgttgaccgacgaggatggcgacgatctggccgac
gcggcggagtga
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integrated database retrieval system
