Candidatus Nitrotoga sp. AM1P: W01_20890
Help
Entry
W01_20890 CDS
T06613
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W01_20890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nim03021
]
W01_20890 (rpoB)
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_20890 (rpoB)
Enzymes [BR:
nim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W01_20890 (rpoB)
Transcription machinery [BR:
nim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W01_20890 (rpoB)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W01_20890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
FH2
SopD
Motif
Other DBs
NCBI-ProteinID:
BBJ24162
LinkDB
All DBs
Position
2370829..2374908
Genome browser
AA seq
1359 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRIGALPIPFLLSTQLESYSAFLQADQLPEQRINDGLQAAFHSI
FPIESHNKYARLDFVSYNLGMPPFDVKECQQRGLTYASPIRARVRLTLFDKEVSKPTVVK
EVKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLKSLGYTPEQILAAFFEFDTFHLGKK
GIQFEVVPERLRGEVARFDILDKSGKVIVAGGKRITVRHIREIQEAGIDKLAVGEDFLFE
RVLAHNVIDKDSGEIIANANDEITETLLAKLHAAGEKKIRTLYTNSLDQGGYISQTLRAD
ETTDQWTARVAIYRMIRPGEPPTEDAVENLFNGLFFSEERYNLSVVGRMKFNRRIGLDEL
TGSVTLSNEDIVAVIKIMVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRTGLARVERA
VKERLGQAEADNLMPHDLINAKPISAAVKEFFGSSQLSQFMDQTNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLALYARINNYGFIETPYRQV
AKGKATDEVKYLSAIEEGRFTIAQANAELDSKGKFTNDVVSSRQHNEFVLASPDRIEYMD
VAPAQVVSVAAALIPFLEHDDANRALMGANMQRQAVPCLRAEKALVGTGVERTVAVDSGT
TVQAWRGGRIDYVDAGRIVVRVNDDETTHGEVGVDIYNLTKYTRSNQNTNINQRPLVKMG
DVIARDDVIADGASTDMGELALGQNMLVAFMPWNGYNYEDSILISERVVAEDRFTSIHIE
ELTVVARDTKLGSEEITRDIPNLSEGQMARLDECGIVHIGAEVGVGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVQAGISGTVIDVQVFTREGLQRDQRAQQIIDDELK
RYKKDLADQMRIVEVDVFTRLGKLLLGKVVNGGPKKLVKGAKLTKDYLTSLERHQWFDIR
LASEDTASQLEQVKEGLAQKRLEFDAAFELKKRNLTQGDELQVGVQKMVKVYVAVKRRLQ
PGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPVDIVLNPLGVPSRMNVGQILETHLGWAA
KGLGNKIGKMLESQAKIEKIRTFLGKIYMHDQAAEITEFSDEDVLDLCRNLSGGVPFATP
VFDGANEDEIKDMLELADLPRSGQITLYDGRTGVAFDRPVTVGYMHVLKLNHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKIY
ESIVKGDHKIDAGMPESFNVLTKEIRSLGIDIDLVRHRE
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcttttactgaaaaaaaacgtattcgtaaaagttttgcgaaacgtatcggt
gctttgccgataccatttttgctgtccacgcaattagagtcttacagtgcttttcttcag
gctgaccagttgcctgagcagcgcatcaacgatggcttgcaggcagcattccattcgatt
tttccgattgagagccataataaatatgcgcgtcttgacttcgttagctacaacttgggt
atgccgccttttgatgtgaaggagtgtcagcaacgcggtctgacttatgcttccccaata
cgtgctcgtgtgcgcctgaccttattcgataaggaggtatccaaaccgaccgtcgtgaag
gaagtgaaagagcaagaagtatatatgggtgaaataccccttatgaccaatactggttca
ttcgttattaatggcactgagcgtgttatcgtgtcgcaattgcatcgttcacctggcgtg
ttctttgaacatgatcgcggcaagacgcatagctctggcaaactgctattttctgcgcgc
attattccctatcgcggttcgtggttggattttgagtttgatgctaaggattatgtctat
ttccgtatagatcgtcgtcgtaaaatgccggtcactattctattgaaatcattgggctat
acgcctgagcagatactggcggcattttttgaatttgatacttttcaccttggaaaaaaa
ggcatccagtttgaggtggtgccagaacggctacgcggtgaagtagcacgttttgatatt
ttggacaaaagtggcaaggtgatcgtggccggtggcaaacgtattactgtgcgccatatc
cgtgaaatacaggaagcgggtattgataagttggcggtaggggaagactttttattcgaa
cgtgtgctagcacataacgtgatagataaggatagtggcgaaatcatcgccaatgccaac
gacgagatcactgaaacactgctggccaagttgcacgcggctggagagaaaaaaatccgc
acgctatataccaatagtctggatcaaggcggctatatttcgcagactctgcgtgccgat
gagactactgaccagtggacagcgcgagttgctatctatcgtatgattcgtcccggcgag
ccgcccacggaggacgcggtggaaaatctatttaacggcctgttcttttctgaagagcga
tacaacttatcggttgtagggcgtatgaaattcaaccgtcgtatcgggttggatgagctg
acaggctcagtcacactgtctaatgaagatatcgtggcggtaatcaagattatggttgag
ttgcgcaatggtcgcggtgaaattgacgatattgatcatctcggcaaccggcgtgtgcgt
gctgtgggtgagttggcggaaaatcagtttcgcactgggttagcgcgtgttgagcgtgcg
gtgaaggaacgtttgggtcaggccgaagcggacaatctgatgccgcatgacttgattaat
gccaaaccaatttctgcggcggttaaagagtttttcggctctagtcaattgtcgcaattc
atggatcagaccaaccccttgtccgaagtgacgcacaagcgccgtatttccgcgcttggc
cctggtggattgactcgtgaacgtgctggctttgaggtgcgtgatgtgcacccgacacat
tatggccgtttgtgcccgattgagacgccagaaggcccgaatatcggtttgattaactcg
ttggcgctatatgcgcgcatcaataactatggcttcatcgaaactccctatcgtcaggtg
gctaagggtaaggcgactgatgaagttaaatacttgtccgcgattgaggaaggcaggttt
actattgctcaggccaacgctgagttagacagtaaaggaaagtttacgaatgacgtggtt
tcatcccgccagcacaacgagtttgtgctggcttcgccagatcgcattgaatatatggat
gtggcacctgcccaagtggtgtcggtggctgcggcgttgataccttttttggagcatgat
gatgcaaatcgagctctaatgggtgccaatatgcagcgtcaagctgtaccttgtttgcgt
gcagagaaagcgttggttggaactggggtcgagcgcaccgtagcggtggattccggtacc
acagtgcaggcatggcgcggtgggcgaatagattatgtggatgcaggccgtattgtggtg
cgcgttaatgacgatgaaactacacacggtgaagtcggtgttgatatctataatctgacc
aagtacacccgttccaatcagaataccaatatcaatcagcgtccactggttaagatgggg
gacgtaattgcgcgtgacgacgtgatcgccgacggtgcttccactgatatgggcgagctg
gctctgggccagaatatgctggtggcattcatgccttggaatggctataactacgaggac
tcgattctgatttccgagcgcgtggtggcggaagatcgctttacctctatccatattgaa
gagcttacagtggtagcgcgtgataccaagcttggctcggaagaaattactcgtgacatt
cctaatctgtccgaggggcaaatggcgcgtttggatgaatgcggcattgtgcatattggc
gcggaagttggagtgggtgatgtgctggttggtaaagttacgccgaaaggtgaaactcag
ctaacaccggaggagaagctgctgcgtgctatttttggcgaaaaagcatccgatgttaag
gatactagtttacgcgtgcaggcgggtatttccggaacagtgatagatgtacaggtgttt
acgcgagaagggctgcagcgtgatcagcgtgcgcaacagattattgacgatgaattgaag
cgttataaaaaggatttggcggatcaaatgcgcatcgttgaggtcgatgtatttacccgt
ctcggtaagttgctgttaggcaaggtggttaatggagggcccaaaaagctggttaagggt
gccaagttgaccaaggattacctgactagcttggagcgtcatcagtggtttgatatacgt
ctcgcgagtgaagacactgcatcgcaattggagcaggttaaagaaggtttggcgcaaaag
cgtttggaattcgatgcggcatttgaattaaagaaacgcaatttaactcaaggcgatgag
ctgcaagttggtgtgcagaagatggttaaggtgtatgtggcagtgaaacgccggttacag
cctggcgacaagatggcgggtcgtcatggtaataaaggtgtggtgtcacgcattgtgccg
gtagaggatatgccttacatggccgatggcacgcctgttgacatcgtgttgaacccgctt
ggcgtcccatcgcgtatgaatgtagggcaaatattggaaactcatctgggttgggcagct
aagggtttggggaataagatcggcaagatgctggaatcacaagccaagattgaaaaaata
cgcacattcctaggtaagatttatatgcatgaccaggctgcggagattactgagttcagt
gatgaggatgtgctagacctgtgccgtaatttgagcggaggtgtgcccttcgccacgcca
gtgttcgatggcgcgaatgaagatgaaattaaggatatgttagaactagcagatttaccg
cgttctggccagataaccctatacgatgggcgtactggggttgcatttgatcggccggtc
acagtgggttatatgcatgtattgaaactgaatcacttggtggatgacaagatgcatgcg
cgttccactggtccatacagcttggtaacccagcaaccgttaggcggcaaggcgcagttt
ggtggtcagcgtttcggtgaaatggaagtgtgggcgctggaagcgtatggcgcagcttac
acgctgcaggaaatgcttacggtcaaatcagatgatgtggctggacgcaccaaaatttac
gagagcattgtcaagggcgatcacaagattgatgccggtatgccggagtcgtttaatgta
ttaaccaaggaaattcgttctttgggcattgatatcgatcttgttcgtcatcgagagtag
DBGET
integrated database retrieval system
