KEGG   Candidatus Nitrosotenuis sp. DW1: DSQ19_06060
Entry
DSQ19_06060       CDS       T07741                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
niu  Candidatus Nitrosotenuis sp. DW1
Pathway
niu03030  DNA replication
niu03410  Base excision repair
niu03420  Nucleotide excision repair
niu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:niu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSQ19_06060
   03410 Base excision repair
    DSQ19_06060
   03420 Nucleotide excision repair
    DSQ19_06060
   03430 Mismatch repair
    DSQ19_06060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:niu03032]
    DSQ19_06060
   03400 DNA repair and recombination proteins [BR:niu03400]
    DSQ19_06060
Enzymes [BR:niu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DSQ19_06060
    6.5.1.6  DNA ligase (ATP or NAD+)
     DSQ19_06060
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DSQ19_06060
DNA replication proteins [BR:niu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DSQ19_06060
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DSQ19_06060
DNA repair and recombination proteins [BR:niu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DSQ19_06060
   NER (nucleotide excision repair)
    Other NER factors
     DSQ19_06060
   MMR (mismatch excision repair)
    Other MMR factors
     DSQ19_06060
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLH09089
UniProt: A0A7D5RAI4
LinkDB
Position
1042872..1044638
AA seq 588 aa
MQFSLISDTFEKMEATTKRLELTQHLVDLFKATPRESISKIVYLIQGKLRPDFEGIELGV
AEKLAIRAIAKSSGSSVKKIQDIFVEDGDLGHAASKALEQKTQTTFIKQQITAERVYDTL
LKIAKLEGARSQDMKMKYISSLLNDATPQEAKFILKIAMGTLRLGIADNTVMDALAIAYT
GSRTNREKLEAAYNVSSDLGRVAEIVAEKNLDGLKEFRVSLFSPIRPMLAERVKSAKEAE
EKLGKEFAAEYKLDGERVQIHLGGDKVVLFSRRLENITSHYPDIVENITKALKTEEIILE
AEAVAINENTGEFLPFQELMHRRRKYNIDRIVSQYPITVNLFDMMYLNGRDLLNSTYEER
RKKLEDITVENEFVKLVPKIIVRSENEVEDFLENGINAGCEGLMLKVLDAPYRAGARGSN
WLKLKREYRNELGDSLDLVVIGAFFGKGRRTGRYGTLLLSTYNQEKDTFESICKVGTGFT
DENLDQFYQILSSKVTLKKNPRIESGMEPDVWFEPELVVEIVASEITLSPVHTCAKDSIR
KGSGLALRFPKFTGKIRDEKAPEDASTDQEVVTLYKNQKKVTQDVSEV
NT seq 1767 nt   +upstreamnt  +downstreamnt
gtgcaattttctttaatatccgatacttttgagaaaatggaagccaccacaaaaagattg
gagcttactcagcacctggtggatttgttcaaggcaacgccaagagagagcatttcaaag
atagtatatttgattcagggaaaactacgtccagattttgaggggattgagcttggcgta
gctgaaaaacttgcaataagggcaattgcgaaatcatctggaagctcggtcaaaaaaatc
caggacatttttgttgaggatggggacttgggacacgcggcgtcaaaggcacttgagcag
aaaacgcagacaactttcatcaaacaacagataactgcagaaagagtgtacgacactttg
cttaaaatcgcaaaacttgaaggtgcaagatctcaggacatgaaaatgaaatacatttcc
agcctcctaaacgatgccacaccgcaagaggcaaaattcattctcaaaatagcgatgggg
acactgaggcttggtattgcagacaacacagtaatggacgcactggcaatagcatatact
ggctcgcgtacaaatcgcgaaaaactagaagccgcatacaatgtttcatcagaccttgga
agagtggcagaaattgttgctgaaaaaaacttggacggattaaaggaatttcgtgtttcg
ttgtttagcccaattcggccaatgcttgcagagcgtgtcaagagtgcaaaagaagcagaa
gagaaactaggcaaagagtttgcagcagaatacaagcttgacggtgagcgagtccaaatt
catttgggtggtgacaaggtagtgttgttctcaagaagacttgaaaacattaccagtcat
tatccagacattgtcgagaacatcacaaaggcgctaaaaacagaagagatcattttagag
gcagaggcagttgcaataaacgagaacaccggcgagtttctcccatttcaggaattaatg
cacaggcgaagaaaatacaacattgatagaatcgtatcccaatacccaataacggtcaat
ctttttgacatgatgtatctaaacggaagagatctgctaaactcgacatatgaagaaagg
cgaaaaaagctcgaggacattacagttgaaaacgaatttgtcaaactagtcccaaaaata
attgtcagatctgaaaacgaagtcgaggactttttggaaaacggaatcaatgcaggatgt
gaggggctgatgttaaaggtgctagacgcgccgtatcgagcaggtgcaagaggaagcaac
tggcttaagctaaagcgcgaatacagaaacgagcttggagatagccttgaccttgtcgta
atcggagcattttttggaaagggtagaaggactggaaggtacggaacgttgttgctatca
acatacaatcaggaaaaggacacctttgagagcatctgcaaggtcggcacaggctttacg
gatgagaacctagaccagttctatcagattctttccagcaaggtgaccctaaagaaaaat
ccaagaattgagagtgggatggagccagacgtgtggtttgaaccagaactggtagttgag
atagtggcgtcagagataacgctaagcccggtacacacatgtgcaaaagacagcatacga
aaggggagcggacttgcactcaggtttccaaagttcacaggcaagatcagagacgaaaag
gcaccagaggatgcatcgacagatcaggaggtagtaacactttacaagaatcagaaaaaa
gtgactcaggatgtttctgaagtttga

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