Candidatus Nitrosopumilus sp. SW: Nisw_00320
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Entry
Nisw_00320 CDS
T06175
Symbol
prf1
Name
(GenBank) peptide chain release factor 1
KO
K03265
peptide chain release factor subunit 1
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Nisw_00320 (prf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niw03019
]
Nisw_00320 (prf1)
03012 Translation factors [BR:
niw03012
]
Nisw_00320 (prf1)
Messenger RNA biogenesis [BR:
niw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Nisw_00320 (prf1)
Translation factors [BR:
niw03012
]
Eukaryotic type
Release factors
Nisw_00320 (prf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
SpoU_sub_bind
Motif
Other DBs
NCBI-ProteinID:
QDI88082
LinkDB
All DBs
Position
complement(54317..55597)
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AA seq
426 aa
AA seq
DB search
MGKIEIEKQDSVKIYKIRKTLEELSRKSGRGTELITVYIPKGKQLHEIIGSLQQEQGTAD
NIKSDLTRTHVVDSLGKVIQRLKLYKKTPERGLVMFCGALPPEEGGPLGSEVVKVWEIDP
PKDLNQYLYRCDDHFHVDILKDMLKDDNLIGFLAIDAKDAGWGLLHGDKIEVLAQTGSGV
AGKHRQGGQSAKRFQKLREMELTYYFNRVAQTTREYFIDIYPVKGLVISGPGPTKEDFIN
GNYLEYRLQNNIIATIDSSYSGSEGIREAFAKSSDILGNFRLVEEKKLVEDLFREINGNT
GKGSYGLQEVIEFLKNNVVETLIITDNTNLNRVEGICKRCKHVQEEIVERPEVIPKKTEY
TNKPCPGCNSMEVEANEQDIVDYLELLASKTGSKLEVVSGSAEHGNMLASLGKIGAILRY
NPGHSK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaatagagatagaaaaacaagattctgttaaaatctataaaattagaaaaacg
cttgaagaattatctagaaaatcaggtcgtggaacagaactaattacagtatacattcca
aaaggaaaacaacttcatgagattattggttcacttcaacaagaacaaggtacggcagac
aacataaaatcagatctaactagaacacatgtagtagattctctagggaaagtaattcaa
agattaaaactttacaagaaaactcctgaaagaggtttggtaatgttctgcggagcatta
cctccagaagaaggaggacctttgggaagtgaagttgtcaaagtttgggaaatagatcct
ccaaaagatttgaatcagtatctgtacagatgtgatgatcacttccatgtagacattcta
aaagatatgctcaaagatgacaatctaattggatttttggcaatagatgctaaagatgca
ggatggggattattacatggagataaaatcgaagtattagctcaaacaggttcaggagtg
gcaggaaaacacagacaaggaggacagtctgcaaaaagatttcaaaaattaagagagatg
gagttgacgtattactttaacagagtagcacaaactacaagagaatattttattgatatt
tatccagtaaaaggacttgtcatttcaggtccaggacctacaaaagaagatttcattaat
ggaaactatctagaatacagattacaaaataacatcattgcaacaattgattcatcatat
tcaggttcagaaggaatcagagaagcatttgcaaaatcatcagatattttaggtaatttt
agactggtagaagaaaagaagcttgtcgaagatttattcagagagattaatggaaacact
ggaaaaggatcatatggattacaagaagtaattgagtttctaaaaaataatgtagtagaa
actttgatcataacagacaatacaaatttgaaccgagtagaaggaatatgtaaaagatgt
aaacatgttcaagaagaaattgttgaaagaccagaagtaattccaaaaaagacagaatat
actaacaagccttgtccaggatgcaattcaatggaagttgaagcaaacgagcaagatatt
gtagattatttagaattgctagcatcaaaaacaggttcaaaattagaagtcgtgtcagga
agtgcagaacatggaaacatgcttgcaagtcttggcaagattggtgcgattttaagatat
aatccaggccactctaaatag
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