KEGG   Candidatus Njordibacter sp. Uisw_002: ABXT42_09545
Entry
ABXT42_09545      CDS       T11338                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
njo  Candidatus Njordibacter sp. Uisw_002
Pathway
njo02024  Quorum sensing
njo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:njo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABXT42_09545 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ABXT42_09545 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:njo03019]
    ABXT42_09545 (hfq)
   03036 Chromosome and associated proteins [BR:njo03036]
    ABXT42_09545 (hfq)
Messenger RNA biogenesis [BR:njo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ABXT42_09545 (hfq)
Chromosome and associated proteins [BR:njo03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ABXT42_09545 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XOJ98963
LinkDB
Position
complement(2008649..2008885)
AA seq 78 aa
MSKGQTLQDPYLNVLRKERVPVSIFLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVKMPAEEDEQE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcaaactttacaagacccttacttaaatgtattgcgcaaagagcgggtg
cctgtttcaatttttttagttaacggcattaagctgcaaggacaaatagagtctttcgat
caatttgttattttgctaaaaaacactgtttcacaaatggtgtataagcacgctatttca
acggttgtgccatcaaggcccgttaaaatgcctgccgaagaagatgagcaggaataa

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