Candidatus Njordibacter sp. Uisw_002: ABXT42_09545
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Entry
ABXT42_09545 CDS
T11338
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo02024
Quorum sensing
njo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT42_09545 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ABXT42_09545 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
njo03019
]
ABXT42_09545 (hfq)
03036 Chromosome and associated proteins [BR:
njo03036
]
ABXT42_09545 (hfq)
Messenger RNA biogenesis [BR:
njo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
ABXT42_09545 (hfq)
Chromosome and associated proteins [BR:
njo03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
ABXT42_09545 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
XOJ98963
LinkDB
All DBs
Position
complement(2008649..2008885)
Genome browser
AA seq
78 aa
AA seq
DB search
MSKGQTLQDPYLNVLRKERVPVSIFLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVKMPAEEDEQE
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcaaactttacaagacccttacttaaatgtattgcgcaaagagcgggtg
cctgtttcaatttttttagttaacggcattaagctgcaaggacaaatagagtctttcgat
caatttgttattttgctaaaaaacactgtttcacaaatggtgtataagcacgctatttca
acggttgtgccatcaaggcccgttaaaatgcctgccgaagaagatgagcaggaataa
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