Nocardioides lacus: P5P86_18860
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Entry
P5P86_18860 CDS
T11404
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nlb Nocardioides lacus
Pathway
nlb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P5P86_18860 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlb03021
]
P5P86_18860 (rpoB)
03400 DNA repair and recombination proteins [BR:
nlb03400
]
P5P86_18860 (rpoB)
Enzymes [BR:
nlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P5P86_18860 (rpoB)
Transcription machinery [BR:
nlb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P5P86_18860 (rpoB)
DNA repair and recombination proteins [BR:
nlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P5P86_18860 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WGL52001
LinkDB
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Position
complement(4019968..4023438)
Genome browser
AA seq
1156 aa
AA seq
DB search
MAARSTTASGNPRRISFAKIQEPLELPQLLSLQTDSFDWLVGNDVHKERIAARKAAGDDV
SEKSGLEEIFEEISPIEDFSETMSLSFDNPVFYDPKYTVDECKEKDFTYSAPLYVSAEFT
NNDTGEIKGQTVFMGDFPLMTDKGTFVINGTERVVVSQLVRSPGVYFERTADKTSDKDIF
TAKLIPSRGAWLEFEIDKRDLVGVRLDRKRKQNVTVLLKALGWTNEQIREEFGEYESMML
TLEKDNIADQDAALLDIYRKLRPGEPPTREAAQTLLNNYYFNPKRYDLAKVGRYKVNKKL
GLTEAFDQQTLTVDDIVAAIRYIVALHDGREQVEAPIGALDIAADDIDHFGNRRMRTVGE
LIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGTSQLSQFMDQT
NPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASF
GRINPFGFVETPYRKVVEGKVTDKIDYLTADDEDRYVIAQANAALTADNTFADERVLVRQ
RDGEVGEVPAAEVDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPLVRSMA
PLVGTGIEYRAAVDAGDVVTATKAGVVKEVSADLIESMNDDGTYTTYKLAKFQRSNQGTC
INQRPLVSEGDRLEVGTPIADGPCTDDAEMALGQNLLVAFMPWQGHNYEDAIILSQRLVQ
EDYLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVTTGDILV
GKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGEEGTVIGVRVFDREDGDELPP
GVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDMPFMEDGTPVDVILNPLGVP
RRMNIGQILELHLGWLAQQGWDLNLTGDKLDTEWAQRLISIGVDKAAPGTKVATPVFDGA
REDEITGLLGATMPNRDGVRLVGEDGKARLFDGRSGEPFPEPVAVGYKYILKLHHLVDDK
IHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVPGRV
KVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGSSIELRDAEEDVFRAAEE
LGIDLSRREPNSVEEV
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcgcgcagcaccaccgcctccggtaaccctcgccgcatctcgttcgcaaagatc
caggagccgctcgagctcccgcagctcctctccctccagaccgacagcttcgactggctc
gtcggcaacgacgtccacaaggagcgcatcgccgcccgcaaggccgccggcgacgatgtg
tcggagaagtcggggctggaggagatcttcgaggagatctccccgatcgaggacttctcc
gagacgatgtctctctcgttcgacaacccggtcttctacgaccccaagtacaccgtcgac
gagtgcaaggagaaggacttcacctactccgctccgctctacgtctccgccgagttcacc
aacaacgacaccggtgagatcaagggccagacggtcttcatgggcgacttcccgctcatg
accgacaagggcacgttcgtcatcaacggcaccgagcgtgtcgtcgtctcgcagctggtc
cgctcgcccggtgtctacttcgagcgcaccgccgacaagacgtccgacaaggacatcttc
accgccaagctgatcccgagccgcggcgcttggctcgagttcgagatcgacaagcgcgac
ctggtcggcgtgcgtctggaccgcaagcgcaagcagaacgtcaccgtcctgctcaaggcg
ctcggctggaccaacgagcagatccgcgaggagttcggcgagtacgagtcgatgatgctg
accttggagaaggacaacatcgccgaccaggacgccgcgctgctcgacatctaccgcaag
ctccgtccgggcgagccgccgacgcgcgaggccgcgcagacgctgctgaacaactactac
ttcaaccccaagcgctacgacctggccaaggtcggtcgctacaaggtgaacaagaagctc
ggtctgaccgaggcgttcgatcagcagacgttgaccgttgacgacatcgtcgccgcgatc
cgctacatcgtcgcgctgcacgacggccgcgagcaggtcgaggcgccgatcggcgcgctc
gacatcgccgccgacgacatcgaccacttcggcaaccgccgcatgcgcaccgtgggcgag
ctgatccagaaccagctccgcaccggcctggcccggatggagcgcgtggtccgcgagcgg
atgaccacccaggacgtcgaggcgatcacgccgcagtcgctgatcaacatccgcccggtc
gtcgcggcgctgaaggagttcttcggcacctcgcagctctcgcagttcatggaccagacc
aaccccatcgcgggcctgacccacaagcgccgtctctcggcgctgggtccgggcggtctg
tcccgtgaccgtgccggcatggaggtccgtgacgtccacccgtcgcactacggccggatg
tgcccgatcgagacccccgagggtccgaacatcggtctgatcggctcgctggcctccttc
ggccggatcaacccgttcggcttcgtcgagacgccctaccgcaaggtcgtcgagggcaag
gtcaccgacaagatcgactacctcaccgccgacgacgaggaccgctacgtcatcgcgcag
gccaacgctgccctgaccgccgacaacaccttcgccgacgagcgcgtgctggtccgccag
cgcgacggcgaggtcggcgaggtcccggccgccgaggtggactacatggacgtctcgccg
cgccagatggtctcggtcgccaccgccctgatcccgttcctcgagcacgacgacgccaac
cgggccctgatgggtgccaacatgcagcgccaggcggttccgctggtccgcagcatggcg
ccgctggtcggcaccgggatcgagtaccgcgctgccgtggacgccggtgacgtggtcacc
gcgaccaaggccggtgtggtcaaggaggtctccgccgacctcatcgagtcgatgaacgac
gacggcacgtacacgacgtacaagctcgccaagttccagcgctcgaaccagggcacgtgc
atcaaccagcgcccgctggtcagcgagggcgaccggctcgaggtcggtacgccgatcgcc
gacggcccgtgcaccgacgacgccgagatggccctgggccagaacctgctcgtcgcgttc
atgccctggcagggtcacaactacgaggacgcgatcatcctctcccagcgcctggtgcag
gaggactacctcacctcgatccacatcgaggagcacgaggtcgacgcccgcgacaccaag
ctgggtccggaggagatcacccgggacatcccgaacgtctccgaggagatgctggccgac
ctcgacgagcggggcatcatccgcatcggcgccgaggtcaccaccggtgacatcctggtc
ggcaaggtcaccccgaagggcgagaccgagctgacccccgaggagcgcctgctgcgcgcc
atcttcggtgagaaggcccgcgaggtccgcgacacctccatgaaggtgccgcacggcgag
gagggcaccgtcatcggtgtccgcgtcttcgaccgcgaggacggcgacgagctgccgccg
ggtgtcaaccagctggtccgcgtctacgtcgcccagaagcgcaagatctccgtcggtgac
aagctcgccggccgacacggcaacaagggcgtcatcgccaagatcctgccgatcgaggac
atgccgttcatggaggacggcacccctgtcgacgtgatcctcaacccgctcggcgttccg
cgccggatgaacatcggtcagatcctcgagctccacctcggctggctcgcccagcagggt
tgggacctcaacctcaccggcgacaagctcgacaccgagtgggcccagcggctcatctcg
atcggtgtcgacaaggccgcgccgggcacgaaggtcgccacgccggtcttcgacggtgcc
cgcgaggacgagatcaccggtctgctcggcgccaccatgccgaaccgcgacggcgtccgc
ctcgtcggcgaggacggcaaggcgcggctcttcgacggtcgctccggcgagccgttcccc
gagccggtggccgtgggctacaagtacatcctgaagctgcaccacctcgtggacgacaag
atccacgcccgcagcaccggcccgtactcgatgatcacgcagcagccgctgggtggtaag
gcgcagttcggtggccagcgcttcggcgagatggaggtctgggcgatggaggcgtacggc
gccgcctacgccctgcaggagctgctcacgatcaagtccgacgacgtccccggccgggtg
aaggtctacgaggcgatcgtcaagggcgagaacatccccgactcgggcatcccggagtcg
ttcaaggttctcgtcaaggagatgcagtcgctgtgcctcaacgtcgaggtgctcagccag
gacgggtccagcatcgagctgcgcgacgcggaggaagacgtcttccgtgccgccgaggag
ctcggcatcgacctgtcccggcgcgagcccaactcggtcgaagaagtctga
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