Nitrosospira lacus: EBAPG3_006020
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Entry
EBAPG3_006020 CDS
T04907
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EBAPG3_006020 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlc03021
]
EBAPG3_006020 (rpoB)
03400 DNA repair and recombination proteins [BR:
nlc03400
]
EBAPG3_006020 (rpoB)
Enzymes [BR:
nlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EBAPG3_006020 (rpoB)
Transcription machinery [BR:
nlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EBAPG3_006020 (rpoB)
DNA repair and recombination proteins [BR:
nlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EBAPG3_006020 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
UbiD
DUF2023
Motif
Other DBs
NCBI-ProteinID:
ARO87360
UniProt:
A0A1W6SNI2
LinkDB
All DBs
Position
1368373..1372446
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AA seq
1357 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRASVLPIPFLLATQIESYAAFLQAQVEPDQRATQGLQAAFISI
FPIESHSRNARLDFVNYVLGTPPFDVKECQQRGLTYASPLRAKVRLTIMDKEASKPTVRE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPITALLKAIGYTPEQILESFFSFDAFHLSKKG
ILFELIPERLRGDIARFDIATKSGKVIVQKDKRITVKHVREMQQAGIDRLAVPEDFLLGR
VLGHNVVDKETGEVVALSNDEITEIVLAKLREANIEEIQTIYTNDLDQGAYISQTMRIDE
TADQMAAQVAIYRMMRPGEPPTEEAVKALFNGLFYAPERYDLSVVGRMKFNRRVGRTELD
GSTTLSNDDIIAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRVERAV
KERLSQAESDNLMPHDLINAKPVSAAVREFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFMETPYRKVK
NGSVTDEIDYLSAIEEGQYVIAQANAELDRRGKFTNDIVSCRHKNEFTLATPDRIEYMDV
APAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKSLVGTGIERVVAVDSGTA
VQAVRGGVVDYVDASRIVVRVHDTETRVGEVGVDIYNLIKYTRSNQNTNINQRPLVKVGD
VIARGDVVADGASTDKGELALGQNMLVAFMPWNGYNFEDSILISEHVVAEDRFTSIHIEE
LSVVSRDTKLGTEEITGDISNLSEVQLGRLDASGIVHIGAEVEAGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGIERDKRAQQIIDDELKR
YKKDLADQMRIVEGDAFERIERLLKGKSATGGPKKLVKGAQITKEYLDSIDPHHWFDIRL
ADEETSLQLEQIEEGLAQKRKAFDIAFEEKKKKLTQGDELPPGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVISKIVPVEDMPYMADGTPVDVVLNPLGVPSRMNVGQILETHLGWAAK
GLGRKIGDMLQADSKIAELRKLLDQIYNTSGKQEDIASLTDAEIMDLAENLKDGVPFATP
VFDGATEHEIKDMLELAGLPRSGQVTLYDGRTGEAFDRPVTVGYMHVLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKVY
ESIVKGDHKIDAGMPESFNVLVKEIRSLAMDIDLDRH
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcgtttaccgagaaaaaacgcatccgtaaaagtttcgccaagcgcgccagc
gtcttgccgattccgtttcttctcgctactcagatcgaatcgtatgcggctttcctgcaa
gcccaggttgagcctgatcaacgcgccacgcagggattgcaggcggcgtttatctcgatt
tttccgatcgagagccactccaggaacgcccgtcttgatttcgtcaattatgtgctgggt
actcctccgttcgatgtcaaggaatgtcagcagcgtggtcttacgtatgcttctccgttg
cgcgccaaagtgcgattgacgatcatggataaggaggcttccaagccaacagtaagagaa
gtgaaggaacaggaagtttacatgggcgagattccgctcatgacgggcacgggttcgttc
gttattaatggaaccgagcgggtcattgtatcccaattgcatcgctccccaggggtattc
ttcgagcatgaccggggtaaaacgcactcatccggcaaattgcttttttccgcccgcatt
attccctatcgcggctcctggctcgattttgaattcgatcccaaggattatctctatttt
cgcgttgaccgccgccggaaaatgccgattaccgcattgctgaaggccataggctataca
ccggagcaaattcttgagagcttcttctcctttgatgctttccatctgtccaagaaaggc
attctctttgagctgataccggaacgtttgcgcggcgacattgcgcgctttgatattgcc
accaaaagcggcaaagttatcgttcagaaagacaagcgtataaccgtgaaacatgtgcgt
gaaatgcagcaggcgggcattgacaggcttgcggtgccggaagattttctgctgggccgg
gtactgggtcataacgtcgtggataaggaaacgggtgaagtcgtggcgctctcgaacgac
gagattacggagattgtgcttgccaaactgcgcgaagccaatatagaagagattcaaacc
atctataccaacgatcttgatcaaggggcatacatctctcaaaccatgagaatagatgaa
accgctgaccagatggccgcgcaagtggccatctaccgcatgatgcgccccggcgaaccg
ccgaccgaagaagcagtcaaggcgttgttcaacggattgttctatgcaccggaacgttat
gatctatctgtagtcggacggatgaaattcaatcgccgtgtgggcaggactgaactggat
gggtccaccacattgtcgaatgacgatatcatcgcggtcatcaagattctggttgaattg
cgcaatggccgcggtgagattgacgatatcgatcatctcggtaatcgtcgtgtccgctca
gttggcgaacttgcggagaaccagttccgttcaggactggtgcgggtcgaacgagcggtg
aaagaacgtctcagtcaggctgaatcggataatctgatgccccatgatttgattaacgca
aaaccggtgtcggccgcggtgcgcgagttctttggttccagtcagttgtcgcagttcatg
gatcagaccaatcccctttccgagattacccacaagcgccgcgtttccgcgctgggaccg
ggcgggctgacgcgcgaacgcgcagggtttgaggtgcgcgacgtgcaccctacccattat
ggtcgcgtgtgcccgattgaaacgccggaaggtcccaatattggtttgattaattcactg
gcgctttacgcccgcaccaatgaatatgggttcatggaaacaccctaccgcaaggtgaag
aacggaagcgttaccgatgaaattgactatctgtcggcgattgaggaaggtcagtatgtg
attgcgcaagcgaatgcggagctggatcgccgcggtaaattcaccaacgacattgtttcc
tgccgtcacaagaatgaatttactttggcgacaccggatcgtatcgagtacatggacgtg
gcgcctgcccagatcgtatcggtagctgcttcattgattccatttctggagcatgatgat
gccaatcgtgcattaatgggatccaacatgcaacggcaggcagtaccctgcctgcgtgcg
gagaaatctctggttggcactggcatcgagcgtgtcgtggcggtggattcaggaaccgcg
gtgcaggcagtgcgcggcggcgtggtggattacgtggatgcgagccgtattgtggtgcgg
gtgcatgataccgaaacacgcgtcggcgaagtgggcgtggatatctataatctgattaaa
tacacccgctccaatcagaacaccaacatcaatcagcgtccactggtcaaagtgggtgac
gtgattgcacgaggcgacgtcgtggctgacggtgcttccactgacaagggcgagctggca
ttggggcaaaatatgctggttgcatttatgccctggaatggctacaacttcgaggattcg
attctcatttcggaacacgtcgtcgccgaggatcgcttcacatccatccatattgaggaa
ctctcggtggtaagccgggacaccaaactggggacggaagaaatcaccggggatatttcc
aacctgtcggaggtgcaactcggacgcctggatgcctcgggcattgttcacatcggtgcc
gaagtggaggctggcgatgtgctggtgggcaaagtcacccccaagggcgagacacaattg
acgcctgaagagaaactgttgcgcgcgatttttggcgagaaggcttccgatgtaaaggat
acatcgctgcgtgtgccatcaggtatctccgggacggtgatcgacgtgcaggtattcacc
cgggaaggaatagaacgcgataagcgtgcccagcagatcatcgacgatgagctgaaacgc
tacaagaaggatctggctgaccaaatgcggatcgtggaaggcgatgcattcgagcgtatt
gagcgcctgctcaagggcaaatcagcaaccgggggaccaaaaaaactcgtcaagggagcg
cagattaccaaggaatatctggatagcatcgatccgcaccattggttcgatatccggctt
gccgacgaagaaacaagcttgcagctggaacaaatcgaggagggcctcgcgcaaaaacgc
aaggcatttgacattgcttttgaagaaaagaaaaagaaacttacccaaggcgatgaattg
ccgccaggcgtccagaaaatggtcaaggtgtacgtagcagtgaaacggcgtttgcagcct
ggggataagatggcgggacgccatggcaataaaggcgtgatttccaagatcgtgccagtc
gaggatatgccctatatggcagatggtactccggtcgacgtggtattgaaccctttgggg
gtaccttcgcgcatgaacgtggggcagattctggaaacccatctcgggtgggcggcaaaa
ggacttggcaggaaaatcggcgacatgctccaggcggacagcaagattgccgagctccgc
aagctgcttgaccagatttacaacacaagtggcaaacaagaggatattgcttcgctcacc
gatgcggaaatcatggaccttgcggaaaatctcaaggacggcgtgcctttcgccaccccc
gtcttcgacggggctaccgagcatgaaatcaaggatatgctcgagcttgccggtcttcca
cgatccggacaggtgacattgtacgatggccgaacgggcgaggctttcgaccgccccgtc
acggtgggctatatgcatgtgctgaagctgcaccacctggtggacgataaaatgcatgca
cgctctactggtccctacagcctggtcacccagcagccgctcggtggcaaggcgcaattc
ggcggacagcgctttggtgaaatggaggtatgggcgttggaagcctatggtgcttcctat
acattgcaggagatgctgacggtcaagtcggacgatgtgaacgggcgtaccaaggtgtac
gagagcattgtcaaaggcgaccacaagattgatgccggtatgccagaatcattcaatgtg
ctggtgaaggaaatccggtcgctggcaatggatatcgatctggatcggcattag
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integrated database retrieval system
